DreEX0077243 @ danRer10
Exon Skipping
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26087183-26117608:+
Coord C1 exon
chr5:26087183-26087327
Coord A exon
chr5:26100407-26100526
Coord C2 exon
chr5:26117541-26117608
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCTGTCATTAGGTC
3' ss Score
10.42
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
TCATGGTCTCATTCTCTTCATCCAGCACCTAGCGCATCCAGTCTCTGACCTCACTGTGATTGAAAACTCCTGCCATCAGTGACCTCCTCATGTGCATCATCTTCTTGAAGTTCGACCCTCGGCCTGCATCCAAAAATGCCTACAG
Seq A exon
GTCTGGACATGGAAGAGGGGAAAGAAGGTGGTTCATGGCTGGGAATTAGCAAACGAGGAAAACTGGCTGCATTGACCAATTACCTGGAAGCACGGCAAAATCCAGACGCCCAGGGGAGAG
Seq C2 exon
GGCCAACGAAGACACTTTGTGTTACTATGGAAACAAGGGCAGCTCAGAGCCCATTCATCTCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(6.7=94.7)
A:
PF057427=NRDE=FE(14.9=100)
C2:
PF057427=NRDE=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTCATTCTCTTCATCCAGC
R:
CTGCTTTGAGATGAATGGGCTCT
Band lengths:
210-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]