GgaEX0002507 @ galGal4
Exon Skipping
Gene
ENSGALG00000002056 | C15H22ORF25
Description
chromosome 15 open reading frame, human C22orf25 [Source:RefSeq peptide;Acc:NP_001007837]
Coordinates
chr15:1254453-1267419:+
Coord C1 exon
chr15:1254453-1254507
Coord A exon
chr15:1263007-1263126
Coord C2 exon
chr15:1267349-1267419
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTCTTACATATTTTATAAGGTC
3' ss Score
5.28
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAGCGCGCGGGGCGGCTCGCGGCGGAGGGCGGGAGGATCCGGAGCAGCCGCTGAG
Seq A exon
GTCTGGATATGGAGGAGGGAAAAGAAGGTGGGACGTGGCTGGGAATCAGTAAGAAAGGCAGGATGGCAGCCCTGACAAACTATATGCAGCCAACAACTGACAAAAATGCAAAAGGAAGAG
Seq C2 exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF057427=NRDE=FE(14.7=100)
C2:
PF057427=NRDE=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGGATCCGGAGCAG
R:
TAAGAAAACAGGTTCTGGGTCTCC
Band lengths:
90-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]