BtaEX0035581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045910 | TANGO2
Description
Transport and Golgi organization protein 2 homolog [Source:UniProtKB/TrEMBL;Acc:F6Q0Y7]
Coordinates
chr17:74972203-74975838:+
Coord C1 exon
chr17:74972203-74972291
Coord A exon
chr17:74975254-74975373
Coord C2 exon
chr17:74975724-74975838
Length
120 bp
Sequences
Splice sites
3' ss Seq
GACGCTGCCGTGTGTTGCAGGGC
3' ss Score
9.51
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCTCATCCTGGCCGCCAACAGGGACGAGTTCTACCACCGGCCGGCCAGGGCCGCAGACTTCTGGGGGAGCAACAACGAGGTCCTCAGCG
Seq A exon
GGCTGGACATGGAGGAAGGCAAGGAGGGCGGCACGTGGCTGGGCATCAGCACGCGGGGCAAGCTGGCCGCGCTCACCAACTACTTGCAGCCGCGGCTGAACCGCAATGCCCGGGGCCGAG
Seq C2 exon
GTGAGCTCGTGGCCCAGTTCCTGACCTCGGACATGGACAGCTTGTCCTACCTAAAGAAGGTCTCGGCCGAGGGCCATCTGTACAACGGCTTCAACCTCATCGCGGCCGACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045910-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(19.9=100)
A:
PF057427=NRDE=FE(26.5=100)
C2:
PF057427=NRDE=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCTGGCCGCCAAC
R:
GGCCGCGATGAGGTTGAAG
Band lengths:
195-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development