MmuEX0013487 @ mm9
Exon Skipping
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18310962-18316827:-
Coord C1 exon
chr16:18316739-18316827
Coord A exon
chr16:18312732-18312851
Coord C2 exon
chr16:18310962-18311076
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGTTGTCATCTGCTGTAGGGC
3' ss Score
7.77
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCTCATCTTGGCAGCCAACAGAGATGAATTCTATAACAGGCCGTCCAAGTTGGCAGACTTCTGGGGGAACAACAGTGAGATCCTCAGTG
Seq A exon
GGCTCGACATGGAGGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGTGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGTGGTAGAG
Seq C2 exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGCCACCTGTATAACGGCTTTAACATCATAGCAGCTGACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-'10-13,'10-10,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.026
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(11.0=100)
A:
PF057427=NRDE=FE(14.7=100)
C2:
PF057427=NRDE=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTGGCAGCCAACAGAG
R:
CTCAGGTCAGCTGCTATGATGT
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: