HsaEX1039961 @ hg38
Exon Skipping
Gene
ENSG00000183597 | TANGO2
Description
transport and golgi organization 2 homolog [Source:HGNC Symbol;Acc:HGNC:25439]
Coordinates
chr22:20043355-20061683:+
Coord C1 exon
chr22:20043355-20043443
Coord A exon
chr22:20052465-20052584
Coord C2 exon
chr22:20061530-20061683
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACACTGTCATCTGCCACAGGGC
3' ss Score
8.37
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCTCATCTTGGCAGCCAACAGGGATGAATTCTACAGCCGACCCTCCAAGTTAGCTGACTTCTGGGGGAACAACAACGAGATCCTCAGTG
Seq A exon
GGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCATCAGCACACGTGGCAAGCTGGCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAG
Seq C2 exon
GCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCTGGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGATGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183597-'29-31,'29-19,39-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(11.0=100)
A:
PF057427=NRDE=FE(44.4=100),PF057427=NRDE=PU(3.2=9.8)
C2:
PF057427=NRDE=PD(1.1=1.9),PF057427=NRDE=FE(40.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCTTGGCAGCCAACAGG
R:
GCCTCTTCATTGTTGAGCACA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains