RnoEX0088559 @ rn6
Exon Skipping
Gene
ENSRNOG00000030245 | Tango2
Description
transport and golgi organization 2 homolog [Source:RGD Symbol;Acc:1310348]
Coordinates
chr11:86824053-86831108:+
Coord C1 exon
chr11:86824053-86824141
Coord A exon
chr11:86829499-86829618
Coord C2 exon
chr11:86830994-86831108
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATTCTGTCTTCTGCTCTAGGGC
3' ss Score
11.17
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCTCATCCTGGCAGCCAACAGAGATGAATCCTACCACAGGCCGTCCAAGTTGGCAGACTTCTGGGAGAACAACAGCGAGATCCTCAGTG
Seq A exon
GGCTCGACATGGAAGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGCGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGCGGCAGAG
Seq C2 exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGGCACCTATACAACGGCTTTAACCTCATAGCAGCTGACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030245-'16-11,'16-9,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.026
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(11.0=100)
A:
PF057427=NRDE=FE(14.7=100)
C2:
PF057427=NRDE=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCTGGCAGCCAACAG
R:
CTTAGGTCAGCTGCTATGAGGT
Band lengths:
203-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]