MmuINT0045832 @ mm9
Intron Retention
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18312732-18316827:-
Coord C1 exon
chr16:18316739-18316827
Coord A exon
chr16:18312852-18316738
Coord C2 exon
chr16:18312732-18312851
Length
3887 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
AATGTTGTCATCTGCTGTAGGGC
3' ss Score
7.77
Exon sequences
Seq C1 exon
GCTCATCTTGGCAGCCAACAGAGATGAATTCTATAACAGGCCGTCCAAGTTGGCAGACTTCTGGGGGAACAACAGTGAGATCCTCAGTG
Seq A exon
GTAAGTGTGTCTCCGAACCTGGTGAGCAGCTGTTAACGTGATCCACTTGTCTTGTGAGGTGGCACCCACCAAATAGGGCTAGTAATGGCCATGCATCCACATGCAAATGCTGAATGCATAAGTAGCCATGAATAATGGCTTTGGGGGACTTGGCCAGCCCCAGAATCAAGTATCTCTAGATGTGAGCCAATTGTTAAGAGACAGTTTGCTCTTTGCTTTAAGGCCTCTTAGGGAGGTGAGAAGCTAGCCCCACTAGAGCTAAGTGTTTTTGATTCTGTCACAGTCGGTGAATCTCCTGGAAGCTCTGGCCTCTCTGCTCTACTGTCCCATGACCTCTGGTCACTTTAGTCTCCCTGGACCTCCAGAACTGTCCTCAGATCACAGAGACTGCTAAGTCCCGTGGGGTTCATGGCTCATAAGTCCTGTGGAGTTCATGGGCTCCTCTCATTTGTTTCTTGTCTTTCAGACCCTTTATCTTTTTTTTTTTTTTTTAAGATTTTTTTTTAAATGTATGTAAGTATACTGACAATGTCTTTAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCGAGTGGTTGCTGGGAATTGAACTCAGGACCTCTAAAAGAGCAGTCAGTGCTCTTAACCTCTGAACCATCTCTCTAGCCCCATCAGGATAACTTTTTATCTTACCAGTTCCCTTTGTGTTTTTGCTGGTCCTTCTTACCTTTTTACCTTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATGAATGGAATGAGTTCTCTATGTAGCCTTGGCTGACCTCAAACTTAGAGATCCCCCTGCCTCTGCTTCCCTGAGTAGTGGGAAGGCATGTGCCACCACATCCAGCTTCTTCCCTTTCACCTTATTTATTTAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTTTGTATGTGTGTGTGTGTGCATGTGTTTGTATGTGTGTGTGTGTGTGCGTGTGTATGTGTGTGTGTGCATGTGTTTATGTGTGCGTGTGTGTGTGCGTGTGTGTGTGTGTGCATGTGTTTGTATGTGTGTGTGTGTGCATGTGTTTATGTGTGCGTGTGTGTGTGCATGTGTTTGTATGTGTGTGTGTGTGCATGTGTTTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCACTCCTGCCATGGGGGTTTAACATCAGGCTTGGCAGCAAGCACCATTATCCACTGATCCATCTTGTCAGGCCACCTCAGTCTCACTGTGTGTTTCTGGCCGGTCTGCAGCTTGCTGCCTCTGCCTTCTGGGATTAGAGGTGTACACTATCATGTCTCACACCCTGGTCCACTCTTCCTCTGAATGTCCATGTTCTCATAAGGTTTATTTTTGGTGGGTTTAGGTGGGAGAGGAAATCCTGACTCTGTTGCTTGGCCAGACAGTGAGAGCTAATTCATTTTTCAATTATTGATTTGTAGGGGGTTTTTTGTTTCTGATTTGTTTTTATGAATTCTGGTTAAGAGTCTTTTGATGGATAAGTGAGCTGCCAACTAATTTCCTTAGTACTTTTTGGTGAGCAGAACATTATTTTTTTTTAATTTTTATTTCTTATGTATACAGTGTTCTGCTTATGGGTATGCCTGATCCCATTACAGATGGTTGTGCTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCTGCCCACGGAACACTGTTTTTAATAAATACATTTTTTTGGTTTGTTCTTCTTTGTCTTATTCAGGAACCCTGTTCCTCTCCCAGGCCATGACATTTTAAACTCTAAGTTGGCAGTCTGACTTTTGTCTCAAATTAATTTTTATTGTGTGTATGTTTGAGTTCATGTATAAGTGTGTGCACATGTGTACATGGAGCCAAAGGACAACTTCAGGACAGACAGAGTCTCATTGGCCTGAAGCTCACCCGTTTGTCTAGACTGTCCCATCACAGTCTCCCATGATCAGCCTTTCTCTGCCTGTACCACCTCATCCTGCATCTTAGATACAGGTTCTCATCCTTGCCAGGCAAGCACATCACTAACTCTCATCCTAGCTCTGCAATCAACTTGTGTGCCTGGGGTGAGTTAAGGGTTGAGATCTATCCCTCTGGTGACTGGTTACTGCAGTCAGCTGAGCATACATGGGTAGGTTTGCTCAGGACACACATGTCACACTGAACTGTATGTGTCTGGGTGCTACAGTCTCTGTCACTGTCCTTATGAGCTGAATACAGTGGCTGCACCTGATCTTTTGAGCCTGAGAGTTCAAGGTTCTAAATATTTTTTAATACTGTTTTAAATGGTACATTTAAAGTTCCACTTTCTAAGCCAAGCATGGTGATATAACCCAGTAATTACAAAACTTTTGAGTCTGAGACAGGAATGTGACCATGAGGTCCAGGTCAAGACCTTCCTCATGAGACCCCAACTTACAAAAACAAAACAAAATAGGGCTAGGGATGTAGCTCAGTTGGTAGAGTGCTTGCCTAGCATGCATTACATAAATCAGGCCCGGGTGGTATACACTGGTAATTTCATCACTTAGGTTAAGACAGAGGAATCAGGTGTTCAAGGTCAACCTCAGCTAAGTAGCAAATTCAAGACCAACCTGAGCTACATTAGACCTTCACTCAAATACCAGTGAACAAGTGAACGAGTAAACATTGGTTCTCCAGCTCTCGAGCCCAACACCATGCTGGTGCTGGTGGGTTGTCGGGTCTGTTTGGCTTTCTAACCCACCCTACCATAGAGCTTGGTTTTCCTTCCTGGGTTCACGTTGTATATTGCTTTCTCTGTTATAATTGATTTTGAAACATGACATTTTAGGGCTAGGAAGGTGCTTCATTGGGTAAGAGAAGCATGAGGACCTGAGTTCAAGTTCTAGCATGGCCCAGCAGCACGCCCTTGTGTGCCTGTAACCCAGTCTGTGGGGGCAGAGACAGAGTCACTGAGGCTTGCCGGCCCCCAGCCTAGTTCCAAATTTAGTGAGAGACGTTGTTATAAAGGGTGAGGTGGAAAGCGACAAGATACCTGTTGTCTTTCTGAAGCTCCCACTCATGCACAGGTACACGTACAAACACATTCATATTACACATACGCACTCATGCAAGCAAATACTTCCTCATATGACATCTCTTTTTTTTTTTTTTTTTTTTTTTTTGATTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTACTACCACACCCGGCCTCATATGACATCTTAATGATGATTTTTACTCAGACTTGAGTGCAGTGGCCTAATGGTCTGGCTGGGACACCTCCTGTTTTCTTTTTTTGTTTGTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGACCTCGAACTCAGAAATCCTTCTGCCTCTGCCTCCCAAGTGCTAGGCGTGCGCCACCACCGCCTGTTTCTCTCTCTTTTTTTTTTCCTCGTTTTTCTAAGGTCTCTCTCACACATACACATCCCTAAGCCACACCTCTCAGCTCCTCTCCTAAGGCTCATTGAGCCTGGACAACCCAGTGTGGGGCTTAGTGGCAACAGCATCTATCCTATGAAGAGCTGTGTGTCCTGGCAGAGCTGTGGAACGTGCCTCTTGAGGACTGAGCAAGAGGGTACCAGCGGGGCCCATCACAGGAACTTGGCTGCTGGTAATGTTGTCATCTGCTGTAG
Seq C2 exon
GGCTCGACATGGAGGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGTGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGTGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-D16H22S680E:NM_138583:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(11.0=100)
A:
NA
C2:
PF057427=NRDE=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: