DreINT0160183 @ danRer10
Intron Retention
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26097219-26100526:+
Coord C1 exon
chr5:26097219-26097307
Coord A exon
chr5:26097308-26100406
Coord C2 exon
chr5:26100407-26100526
Length
3099 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
3' ss Seq
TTTTTGTTTTCTGTCATTAGGTC
3' ss Score
10.42
Exon sequences
Seq C1 exon
GCTCATTCTGGCTGCTAACAGAGATGAGGTCTACAGCAGACCGTCCAAAGCTGCAGAATTCTGGGGCAGCAGCAGCGAGATCCTCAGCG
Seq A exon
GTAAATATCATCCTTATTATTCAAATTCTGAGATGTATTTATTATTTAATCAATGTCTAGTTTTTTATCCCATCAACATTCTTATGGTGGACTTTGTGTCACTCATGAATTCAGATATTGGTTTCAGTTTCAGTCTGAACTGCATATAATTAAAGGGTTCATTTTAAAATGAACAAGAGTTTCTTTAAGAGTCTCTTGCTTTGAGACCATTATTTAATCTCTCATAACCAGACTTTTTGATGTTTTCCTGTGCAGTGTCTAGTTCATGTTAAATTCTATTTTGGTAAAGCAGCCTATTTGGACAAACAAAACTGTTTGAAGTGTATTAAGTGACTAAACACTGTTTTATGTACCTTTTACAGACAGTGATGGATTAGCATGATTAGCTGTTTGTCCAAGTAGCAAGCATATTTAGAATTATATTTATATTTAGAATAATATTTAGACTTTTTCAAGCTAGTGGAGCAGTTTGGCAGTTTTAATTATATATTTAAATATTATTTTCACACTTTGTACTCTCATTGGCTAGTTTTTTTATTTATTTTTTGAACAATCTTTTTATTGACATGTAATAAAAATATAACAATATAACATCACATTCATATTTACATCTTTGTTTTCAATTTAGAGAAAAAGAACAACAGTAATAAAAAAACAATATAAGCGAAATAAAAAGGGGGGGGGGGGCACTGGTTGTTTAAATTATTCATTTATTCATTTTCTTGTCGGCTTAGTCCCTTTATTAATCCAGGGTCACCACAGCGGAATGAACCGCCAACTTATGTTTTTACGCAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGCGAAACATCCACACACACATTCACACACACACACTCATACACTACGGACAATTTAACCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAACGCAGGGAGAATATGCAAACTCCACACAGAAACGCCAACTGAGCCGAGGTTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCCTCGACTTTGTTTAAATTAGTAAAAGATTATTCTAGAAAAAAACATTAGGAAGAAATTGTTGAAAATACAAATCATCTATTGGAGGCATGCACCAGATCATCAATATGACAATGGTTTGTTTAAATAAATCTTTGGAAATAGGGGGAATGTGTTGATAGGCTAAGTCAATGTCAGTTTATTTATTGAATTGCTGAAATTTGAGTTGGAAATAAAATATATAAAGAGTGCCCACATTTTCTCAAAAACAGTAAGTTTGCCTTTTAACATGTATGACAGTTTTTCCATTGCTAAACAGAAGGACATATTTTTGATAGATGTATAGATGGCCTTTGCATTTTTCTCCTGTACAAAGCTATTAGACGCTTTGCTTGGAGTATACTTATATTGATAAGTTTACAAGTGTTGCTGTAGCAATCAATTTTTTTCACAAGTAATTCCCAAAATAAACATTTCTTGTTTCATGGGCAGTTTTATAGAGACCATTTCAAAAATGAATATTACCACCTCTTTCAAAATCCTTGTATACTTTCTCAGCTAGTTATTTTGTTCTCTTATTTGTTTGTTTGTTTATTCATTTATTTACTTTTGCACTGTGATATTTGGATTTCTGTCATGCTTGTGGAGCTATTTGACTGTCTTATTCATTTATTTTATTTCACTTTATTTTATTTAACTTCAATGTTGTCACAGTTTGTCCACTCACCAGCTAGCTATTTTTTCTGTAATATCTGTTTTACATTTTGTTTTATTTACTGAACATTTAGAAAATGATTTGTTGGATTTTGAGAGTTCAAACGGTTAGAACTTTTATTGCCAATGGAAAGAATAATCTAATATTATTTTTCCTGTGGAAACAGAGTCATGAAGAAGAGAAGGCTGGTGGCATCATCTGCTTGACAGGTTAACATGTCTAGTGTCCTGCATTATGCCTCAATGGTGGAACCGAACGATTCACTAGCAAGAAAACAGTTAAACAGACTATACGTGCAATGATAAAGAATAAACCTCCTCCATTTGGCCTCTTTACTTTCTCTTTACTTTACTCCTTTACTTTTATGTAGTAAGAAAATTGTGGAAACTCACTTCACTTAAGACACCATTAGCATATTTAATTTAGTAATTTTGTTTAAGTGCAAAGATTTGTTTCTAAATTCAGTTCTAATTTCCAGCAAATGAATAAATGAAGCATAATAACAAGTGTGGTAAAAAAAACAATGATTTCATGCCTTACGTGCCTTGTACCGGGTGCATGATAGGGCTCCTAATGTTACATTGATTAAGTGTCCATTGTAAGGACTGACCACCCTCAAGAAATAAGAAGTGTTCAAAAGACTGATGACCCACTGTCTGCTAAACCATACACCCAAGTACACAAATCAGCCATTCTCTCTGCTGTAAAAGATCATAGATATTTGGCTTTTGTTTTTTTTCTGTCCATGTTCCCCTATTTAATCTTGGGGTCAGACAGAACGGATCGGTCTTTAATTGATGAGTGCTTTTATGTGCAGTGGTAGAAATAAATTCGACTTTTAAGGAAGAAGCCCTTATCTGTCTATAGGAGCAAACTGTGGATGAGCAATGATGGGGTCTTTGGATGATGATGATGAAAAAGCCAGAAGCTTTCGGGGGTTTGTGTTTTGTGAAACAGTCAAAATGTTCCCTACGTTAATAAAAAAAAGTGGTTGTGAGCCCTGAAAATGTACCACTTTTATGAATTCTGTTGTCACATAAATAAACATGTGTGAACACAACCATACTCAAATACAGGACTGCCAACCATATTGTGCCACTGTGTTCCGTGTACTAGCTTTTGTGATTCTGTTCTTTCCAGATCAGTGTGCTCAGGCATACACTGTTTTCCTTTCACTATCAAGATGGAAAATATTATTTTGTACTTTCAGTCTAGGTCATTCCTGAGCTGTTTGGTGCATCCAAATCTGATCTCCTGCTGCTTTTTATTATTACAGCCTGCAGACTGGATTTAATGTCACTTTGACATTAAGTCTCAATGTGACTTTTTTGTTTTCTGTCATTAG
Seq C2 exon
GTCTGGACATGGAAGAGGGGAAAGAAGGTGGTTCATGGCTGGGAATTAGCAAACGAGGAAAACTGGCTGCATTGACCAATTACCTGGAAGCACGGCAAAATCCAGACGCCCAGGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550:ENSDART00000079064:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(11.2=100)
A:
NA
C2:
PF057427=NRDE=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]