MmuEX6061304 @ mm9
Exon Skipping
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18308063-18312851:-
Coord C1 exon
chr16:18312732-18312851
Coord A exon
chr16:18310962-18311076
Coord C2 exon
chr16:18308063-18308133
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATGTGTGCCCTGCCTACAGGTG
3' ss Score
11.09
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTCGACATGGAGGAAGGCAAGGCAGGAGGAACATGGCTGGGCATCAGCACACGTGGGAAGCTGGGGGCACTCACCAACTACCTACAGCCCCGGCAAGAGCCAGACGCCCGTGGTAGAG
Seq A exon
GTGAACTTGTGTCTCACTTTCTGACCAGTGACATGGACAGCCTGTCCTACCTGAAGAAGGTCTCTACAGAGGGCCACCTGTATAACGGCTTTAACATCATAGCAGCTGACCTGAG
Seq C2 exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-'12-14,'12-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.026 C2=0.093
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(14.7=100)
A:
PF057427=NRDE=FE(14.0=100)
C2:
PF057427=NRDE=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACATGGAGGAAGGCAAG
R:
GGTGTCAAGACAATAGGCTCAGG
Band lengths:
187-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: