MmuEX0013488 @ mm10
Exon Skipping
Gene
ENSMUSG00000013539 | Tango2
Description
transport and golgi organization 2 [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18300827-18308040:-
Coord C1 exon
chr16:18307970-18308040
Coord A exon
chr16:18303683-18303836
Coord C2 exon
chr16:18300827-18301552
Length
154 bp
Sequences
Splice sites
3' ss Seq
GGCTGACCTTCTTCCTATAGGAA
3' ss Score
9.68
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAACAACTCTTCATGGAAGCAGTGGAGCAGAGCGAAGCACTCCCTAAGGACGTCCTTGTCACTCAGCTCCTAGATGTCCTCAACAATGAGGAGGC
Seq C2 exon
AACCAACACCATCATCCTTGTGGATGCAAATGGCCACGTGACCTTCACTGAACGGAGCATGCTGGACAAAGACACCTCTCGCTGGGAGACCAACACCTATGAGTTCACACTACAGAGTTAGCCCCTGCCAGGTTCCAAGGATGCTGTTCCTGAAGGGCCAGCGTGGACAGGAACCTTTCACGGCCACTCTGCAGGTCTGTGGCTCAGCCAGCACCCCTAGGACCAGGTTGTTCTGATTTGTGTCCTCATACTCAGCTCAGGGTCTCTCTTTGTACCAATGGAGAACGACAGAGTTAAATACTAGGCGTGAGTCAGGCCTGGGTATGCCGTATGTGAACACACAGACCTGTTTGTTGCTCAACCCCACTGCCACTGTGTGCACCTGACTGATGAGTAGGATCATGCCTCTCACCTCACACGTTTGGGCAGTGGGTCTCATCCATGGACGGGTAACAAAAGCAGACTCTTTACAGAAACTGGAGATCCTGTATTTGTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539_MULTIEX1-2/3=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(15.9=100)
A:
PF057427=NRDE=FE(18.8=100)
C2:
PF057427=NRDE=PD(12.9=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGCCTATTGTCTTGACA
R:
AACAACCTGGTCCTAGGGGTG
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types