GgaEX1011658 @ galGal4
Exon Skipping
Gene
ENSGALG00000002056 | C15H22ORF25
Description
chromosome 15 open reading frame, human C22orf25 [Source:RefSeq peptide;Acc:NP_001007837]
Coordinates
chr15:1267349-1268817:+
Coord C1 exon
chr15:1267349-1267419
Coord A exon
chr15:1268452-1268605
Coord C2 exon
chr15:1268713-1268817
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGGTGCATGCACTTGAATAGGAA
3' ss Score
3.41
5' ss Seq
GCCGTAAGA
5' ss Score
5.75
Exon sequences
Seq C1 exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
Seq A exon
GAATATATGGACTGAGTAATTGTTTGTTGGATACACCATGGAAGAAACTTCAGTATGGGAAACAGCTTTTCACAGAAGTCATCAACAGAAGTCAAGACCTTGCCAAAGAAGACTTGGTGCAGGAGCTCCTTACAGTGATGAATAATCAAGAGCC
Seq C2 exon
TCAGTTACCTGACCCTGCAATTGAAGACCAAGGGAAGGAATACATACGTCCTATATTGAACAAGTATGCAGCTGTGTGTGTTCGTTGCCCGGGTTATGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056-'22-10,'22-9,23-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.222
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.8=100)
A:
PF057427=NRDE=FE(18.8=100)
C2:
PF057427=NRDE=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAAAGGAGATGTAATTTGCT
R:
CTTGTTCCATAACCCGGGCAA
Band lengths:
175-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]