GgaINT0007913 @ galGal3
Intron Retention
Gene
ENSGALG00000002056 | Q5ZI44_CHICK
Description
NA
Coordinates
chr15:1285153-1286409:+
Coord C1 exon
chr15:1285153-1285223
Coord A exon
chr15:1285224-1286255
Coord C2 exon
chr15:1286256-1286409
Length
1032 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TGGTGCATGCACTTGAATAGGAA
3' ss Score
3.41
Exon sequences
Seq C1 exon
TACCACCAAAGGAGATGTAATTTGCTACTATGGAAACAAAGGAGACCCAGAACCTGTTTTCTTAAATCCTG
Seq A exon
GTAGGTTTACGTCTAGAAGGTTGGAATATTACTCTGTTACTTTAAAGGAATCAGAATATAACCATATTGCTCCAGTATTTTGGCTGTTCAAGCATTGTCTCTGCTAACTTTCCTTGCATTCTTAAAAATAAATGCTTAAATTCATTTAAATATTTGCTAATACATCTCAGTACAGAGTCAGTAGTTTACAACAGCTTCTATCTTTGTCGGCGTTCCAATCTCTGCTGCAATTACTGGAATGTTACTTAATTATGATTAGGGGACAAAGGTCTGTCTTGAGGAATGGAATTTTCAAAGTCAGAGGTAACTTTTCTTACCTTGCAGTTAAGAAGATAATTTGACTGTGCCCCCCTAGGGACAGAGTTGGCTTTAAAAAATAATGAACTTTTATCTTTAGATCAGGTAGACTGATTTAAAATATTTAAAATCTAGCCCTTTGTTAGCCAGCTGTATAGGAGAGTCCAGTATTCATCACCAAAGACCAACAGAAATGGACTGAGACATGCAGAATGCTTTAGCTGGTTGATAACAGTTGTGAAGAAGTATGTGTTAATATACAAAGGCTTATTTTGCTTGCTTAAAAAAAAGTCAAAGTGTTGCTGTCAATAGGCAAATAGTGACTGTACCAGTTGTGGCATAAATTCTTGGAAACAACTATTCGATTTTTGTACAACTACAAGCACAACAGATTTTAACAAACAAAAATCTGGTCACTCCTTTGTGTTACCTCTGTATGATATGAGACTGAATTTCATTAACTTCATAATGGATGAAGCTTGGAGGATTGGAATTGCTTTACAGAAATAGAGCCAACAATGTAGTGATTAAGAGTTACTTTGTGTTTAGGCTATGCAATCCCCTAGTGGGCTGAGAGTTATTTTGTGTTTAGGCTATGCAAAACCCTCATGTTTCTGTTAGTGTTGTGCTCTGGGCAGGGAATCTTTGGTATTTCACTAAAGTCTGGGAAAAGGTTAAGTTGTTTTATTAAGAGTTACATGCCTTTTTTTTCCTTTGGTGCATGCACTTGAATAG
Seq C2 exon
GAATATATGGACTGAGTAATTGTTTGTTGGATACACCATGGAAGAAACTTCAGTATGGGAAACAGCTTTTCACAGAAGTCATCAACAGAAGTCAAGACCTTGCCAAAGAAGACTTGGTGCAGGAGCTCCTTACAGTGATGAATAATCAAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056:ENSGALT00000003199:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.8=100)
A:
NA
C2:
PF057427=NRDE=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAAAGGAGATGTAATTTGCT
R:
GGCTCTTGATTATTCATCACTGTAA
Band lengths:
224-1256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]