MmuINT0045835 @ mm9
Intron Retention
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18303776-18308133:-
Coord C1 exon
chr16:18308063-18308133
Coord A exon
chr16:18303930-18308062
Coord C2 exon
chr16:18303776-18303929
Length
4133 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTGACCTTCTTCCTATAGGAA
3' ss Score
9.68
Exon sequences
Seq C1 exon
CACGTCAAAAGGAGATGTTGTTTGCTACTATGGAAACCGGGGGGAGCCTGAGCCTATTGTCTTGACACCAG
Seq A exon
GTGAGCCTGCTTTGGTGTCTAGACAGGGTGGGGACTGCTCCTATATTGGGAATACTATGTGGTAAGACTAAGCAAGACCCCTGGGAAACAGCATTATTGGGGTCCAGCAGCACAGCCCTGGGTGAACTAACCTGGGGCCAGCTGCTTTCTCTAGTCACAGCCTGTGGACAGTCCTTGCTAGTAACATCTTGGGTCTGTGGGCCTTGTACTCTAACTTGGGTGCCTACAACTGAGCCATTGGCTCATATCAAGTATCCCTACCCCTAGGGAAAGAGTCAGTGTCCTCAATAACATCCATATCCCACCTCTTGTGACAGATTTCATTTGTAATAGTTTCCTCATCTCAAAGTCATGAAGCCTTTCTTAGGCAGGTGGCACAGGTTACTAAGATTGCAGGACACATGTCACTCCTGCCCAGTGAGGAGCAATGGGAGGCCCAAAATGTTGTGTTCCAGGTGGAACTTAAGGGAGGTGGGTGGAGCCCCCAGGAAAGCTGGATAGTCCTATCCTGCCTGAGCTACTAGTTCCAGGGATAATTGTAGAGTCTGTGGTCCTAGCTTACTGCATACCAGAATTCATAACACAGGTTTATATCAACACAGAATTCCAGCTTTTCATGACTGTCTGGGGATGTTTGAGCCCCCGGTGGGCCAAGGGGCTCCAGAGCTTCCACCAGTTTGCTGGGTTATGTCCAGGCCAGGATGTCATGGGCTGATGAGATCCTAGAACAGGCAGCCCACACCAAAGCATAGGTTCTAGTCCATCCCACTAGCTCTCCCACACAGCTCACAAGGGACTCTCTGCCAGCTGTGGGCACGCTGGCTATAGTGCCCTCAGTGCCCTCGATGCTGTTTGTGCTCCCTTTCTTGTGCAAGCCCCAGAACAGGTCCAGTAGCGCCCCAAGGACCAGCTGCTGTCTGACTTGACGTCCTGAGTGTAGGCAGTCATTTGGGTTCATCTTTAGCCAGATCTTGCCACTCTGCTGCAGAGCCCTTTTGTTTCAGCTCCTTGGGGTCTGCAGATCCATTGAAGGGGGTTTGTATCCTAGGAGTCCATCTCCTACCAGCCCAATCTCAAGTGTCCGAGAAGCTCTTGGGAGAGCAGCTGGAAGCTAGGGCATGAGGCCTGCTGTTCTCAGAGTGGAAGACTCCCTGACAGAGCTTATTTTCTAGTACAGTTTCTTCCCATCTACTCCATGATTTATTCCTGAACTTGCCTCTACTTGATCTTTATCCACTCTTTTCTAGTGTTGAGACTTGAACCTACAGTCTTACACCTACTAAACATACTCTTAGTAAACACTCAGACCTCTGCTTTTAAGCAGGCCACTTGCCCTGAATTCAAATTCAGCACTGACTACATAGTGAGTGCCAAGCCTGTGTTACAGAATGACGTTCTCAAAAAACAAACCTTCATTGAAACGTGACTCTTACATGCTGTGCACGTAAAGTCTATCACACAGCCAGCTATGGTGACACAAGCCTATAATCCCAGCACTAGGAAGGCAAAGGCAAAAAGACAGTCATAATTTTAAGGCCAGTTGATGTACAGAATAAGTTCAAAGCCAGCCAAGGCTCCATGACAAGCCTCTTTCTTAAGAAAGGAAGGAAGTAGGTGGGGCTGGTAAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGTTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAGGGATCCAATGCCCTCTTCTGAAGACAGCAACAGTGTACTCACATACATGAAATAAGTAAATCTTTAAAAAATGGGGGAGTGGGGTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGTCTGCTCTTCTTAAGGTCCGAAGTTCAAATCTCAGCAACCACGTGGTGGCTCACAACCACCTGTAATGAGATCTGATGCCCTCTTCTGGTGCATCTGAAGTCAGCTACAGTGTACTTACATATAATAAGTAAGTAAGTAAATAAATAAATAAATAAATAAATTTTTTTAAAAAAGGAAGGAAGGGAGGAAGGCAGGTAGGAAGGGTGTTTCTTATAAGCTGGGAGTGGTGGTACTCAGGCTGCTGAGGCAGAAGGATCATAGATTGAGGTCAGACTGGACTCCATTAACAGTCAACAGACGCTGGGTGTGTTGGTGCACACCTTTAAATCTTAGCACTCAGGGAGGCAGAGGCAGATGATTCTCTATGAATTCCAGGCCAACCTGGTTTATACATTGAGTTTCAGGTCAGCCAAGGTTACATACTGAGACTATCTTAACACACCAAATAAATTTTTAAAATAAAGAACTGATGGTGACCTGGGCATGGTGTGCACATCTTTAATCCCAGCACTCAGGCAGAGGCAGGCAGATATCTGTAAGTTAGAGGCCAGTCTGCTTTACATAGGGAGCTCCAGTAATTCCAATTTTTTTTCGTTATCCACCAGAAACCCCCAGATTTATGTGCACCTGCTCCCGCTCATGTCCTGTGTAGTGGGGTTTATGCATTCTGAACATTGTCGTTTGGGTGGAAGCAGCCATGTGGTGGAGGAAGCTGACCTCTAATTTGGCTCACTTGCCTTGGTGTTTTCAAGTGCCTTTACCCCAGAGCCATGTCACTGGCCCATACATCTCACTCCATTCAAGCCTGGAACTTCCACGTAGTTTGCCAAAGCATCTATACCATTTTACACCTCTGCCAGCAGTTTGCAAAGGTTCCTGTTTCCCGAGCTCCCACCAAGACTTACTGTTCTCTCTCTTAGGGAGAGGGTTCTAGAGGTGAAACCCAGGCCTGTAAACATGCTGAGCACATACTGTGCCACTGAGCTACATCCTCAGGCCTTTGTTACCCACCTCCCCAACCCCACATCATTACCACTACCTCTCCCTTTTCAGAGAGGGATTAGAGGCTCATCTATCCCAGGCTAGCCAGACTCACACTCAGTGTATCGAGGATGGCGTTGAGTTTCTGACTCTCCCACTGCCTCCTTCTGAATGCTGGAATTACAGGTGTGATCTATCCATCTGGAAACTGTGTTCTCTTGTAGTCTTGTAAAAGTTCCTTCTATAATCTACAAATCTCATTGGATACCTAACTTGCAGAAATCCTTTCCCATTTTGTGTTTAAGTAAAACTTCTTTGGCACTGTTTTTTTTTTTTTTCGAGACAGAGTTTCTCTGTATAGCCCTGACTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCGACTCTTTGGCACATTTTTAAAATACATAACTTTAAATGAATATGAAGTCCCATTTATCTCGTTGATATGCTTGTGTTGTCTTACGTAATAAATCATTGCTCACTGGGTCATGAAGCTTTTTCTTTTACAAATGTGTTTACTGCCTGTGTGCATGTGTGTGCGCTAGCACATGCACTCACATTGGGACACAGTCTCATTCAACCCAGGCTGACCTGGAGCTTGCTACGTAGGCTGACCTCAAACCTGCCAAATCTTGCCTCAGCCTCCTGAGTTCGGATTATAGATACATGCCACCATATTTGATCCTAAAGTGGGTTTTAGAGATAGGTTTCATATAAACAAACTTGCCTCAAACCTTTCTCTCTGTTGTGCATGTGTGTGTGCGTGTACATGCCTGTGTGCCCACACCTCAGTTTGCATGTGGAGGTCAGAGGACAAACTTGCAGGAGGCAGTTCTCTCCCTCAACCAGGTAGGTCCCAGAGCTTGAACTCAGGTCATCAGGCTTGGTGGCACGTGCCTTTACCCACTGAGCCATCTTTCTGGCTTTGAGGTAATTTTTGCATAGTGTGAGAGGTCAGGTCCAACTCCATTCTTTGTGAATCTCCCAGCTCCATTATGGAATGGTCTTCCAAACTAGTCCAGAAAGAAAATGCAGTGCCATAGGACTGACAGCTTCACCTTGGGGGCTCCAGTAGAGCCAGAGTGATGGTCTAGGTTCCCAGCTGGACCTGTAGAATTGGCTTCTACAGGTGCCTTGTTTAGGATGCTTGACTGTAAGCCATCTGCTCCAGCTACCTGTGGCCTCTGCATGGCCAGGCTGACCTTCTTCCTATAG
Seq C2 exon
GAACCTATGGGCTAAGCAATGCCCTGCTGGAGACGCCCTGGAAGAAGCTGTGCTTTGGCAAACAACTCTTCATGGAAGCAGTGGAGCAGAGCGAAGCACTCCCTAAGGACGTCCTTGTCACTCAGCTCCTAGATGTCCTCAACAATGAGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-D16H22S680E:NM_138583:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(15.9=100)
A:
NA
C2:
PF057427=NRDE=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: