DreINT0160186 @ danRer10
Intron Retention
Gene
ENSDARG00000056550 | tango2
Description
transport and golgi organization 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040808-42]
Coordinates
chr5:26117541-26117937:+
Coord C1 exon
chr5:26117541-26117608
Coord A exon
chr5:26117609-26117789
Coord C2 exon
chr5:26117790-26117937
Length
181 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
GACTGTGTTGGTTTCAGCAGGAA
3' ss Score
6.41
Exon sequences
Seq C1 exon
GGCCAACGAAGACACTTTGTGTTACTATGGAAACAAGGGCAGCTCAGAGCCCATTCATCTCAAAGCAG
Seq A exon
GTTTGTTCAGTCCCTCAGTTTGCTCTCTGTGTTTAGACGCCAGTGTTCCTGCATAAAGCGCTGCTGTTTGCAGAGTAACACTGCAAATGTACACCACTTACACTGTTTCAGCAGCAGATTGGTAGGTGTGTCTCGCTCAAAGCGCACAGGAAGTGATGGATGACTGTGTTGGTTTCAGCAG
Seq C2 exon
GAATCTATGGGTTGAGTAACTCTCTTTTGGAAACTCCGTGGAGGAAACTGCAGCACGGCAAACAGCTGTTCAGCAGTGTAGTGAGCAAAACGCTGCCCCCCGATGGCTTAGTGCAGGAGCTGCTCCACATCCTCAATAACGAGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056550:ENSDART00000079064:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF057427=NRDE=FE(8.6=100)
A:
NA
C2:
PF057427=NRDE=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACGAAGACACTTTGTG
R:
TCGTTATTGAGGATGTGGAGCA
Band lengths:
210-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]