RnoINT0150341 @ rn6
Intron Retention
Gene
ENSRNOG00000050573 | Tgfbr3l
Description
transforming growth factor beta receptor 3 like [Source:NCBI gene;Acc:688681]
Coordinates
chr12:2543043-2543483:-
Coord C1 exon
chr12:2543325-2543483
Coord A exon
chr12:2543105-2543324
Coord C2 exon
chr12:2543043-2543104
Length
220 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TAGCTGGAGTCTTCTTTCAGCAC
3' ss Score
0.51
Exon sequences
Seq C1 exon
GGCCATCCAAGGGTCTCCCAGGCAGAGCGGTACGCCCAGAGCCGCCTGCTCCAGCTGCTACAGCACTGGAGCCTGCACCAGTGGTGGCTTTGGTGTTGGCGGCATTCGTGCTGGGTGCTGCGCTGGCCGCTGGGCTTGGTCTCGTCTGTGCACACTCAG
Seq A exon
GTACCGACTTCTGTTCTGCCAGAACCCCACACCTATTTCCACAGGTCCAGTCTAGTCTAGTCTAGTCTAGCTGCCCCACCCCCACGCGCACACATCCCTGAACCTGCCTCCCAGATCTGGCCCTTAGGGTTGCTACACCTGCAGCAGCTCCCACTAGGGGGCGCACTTAACCTGGCGCAGGGCACAGGGAACTCCTGTTCTAGCTGGAGTCTTCTTTCAG
Seq C2 exon
CACCCCCACCTCCAGGCCAGCCTCGTAGAGCTTCGCTCAGCGGCCCCCAGCTCCAGAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050573:ENSRNOT00000075527:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCCAAGGGTCTCCC
R:
GAAGCTCTACGAGGCTGGCC
Band lengths:
193-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]