HsaINT0094987 @ hg38
Intron Retention
Gene
ENSG00000260001 | TGFBR3L
Description
transforming growth factor beta receptor 3 like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr19:7917628-7918129:+
Coord C1 exon
chr19:7917628-7917859
Coord A exon
chr19:7917860-7918056
Coord C2 exon
chr19:7918057-7918129
Length
197 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
AGCTCGCCTCTCCCTTCCAGCGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GCCGTGGGGCGGCAGAGCGGGTGGGAAGGACGCCTGGGAGCTGGACCCAGTCTCAGCGTGGCACTTCCCACAGGGCCGCCCAAGAGTGTCCCCGGCCGTGCAGTGCGCCCTGAGCCTCCCGCGCCGGCCCCCGCGGCCCTGGAACCCGCGCCGGTGGTGGCGCTGGTGTTGGCAGCCTTCGTGCTGGGCGCCGCGCTGGCCGCCGGGCTGGGTCTCGTCTGTGCGCACTCAG
Seq A exon
GTACCGACGACCTCCGCCAAGCCGGGCCCCCAGTCTAATCCCGCGCGTCGGGACCCGGGGCGGCCGCGATCCCGCCTGCGGGGCCTGATCAACCCTAGCTAGGCCTGCCTCCGCGATGCCCGCAGCAGCCCCCAGGGGCCGCCCTTAGCCTGGCGTGGCGCGCAGCAGCCCTTCTGCAGCTCGCCTCTCCCTTCCAG
Seq C2 exon
CGCCCCACGCCCCTGGCCCGCCCGCGAGAGCCTCGCCCAGCGGTCCCCAGCCCAGGAGGTCCCAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260001:ENST00000566166:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTCAGCGTGGCACTTC
R:
CTTCCTCACTGGGACCTCCTG
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains