BtaINT0073531 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6655498-6656970:-
Coord C1 exon
chr3:6656767-6656970
Coord A exon
chr3:6655591-6656766
Coord C2 exon
chr3:6655498-6655590
Length
1176 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
3' ss Seq
TTTCTTGATTTTACTTGCAGGTT
3' ss Score
10.03
Exon sequences
Seq C1 exon
TGGCGTGGGCCTAGCCCTCTGCAGGCGGTTGCTGGAAGAAGATGATGCACTTCACCTGTGCTTGGCGTGCAGGAACATGAGCAAAGCAGAAGCTGTCCGCACCTCTCTACTGGCCTCCCACCCTGCTGCTGAGGTCTCCATCGTGCAGGTGGATGTCAGCAGCCTGCCGTCGGTGTTCCAGGCCACCAAGGAGCTCAAGCAAAG
Seq A exon
GTCTGCGTCTTATTGATGGCTTTTTTCTCATGTGATTGTGCAGTGCAACAGCTAATAGAATAAGAAGGGATGGGAAAATCTATAAAAGAAACAGGTGCAGTGTAAAAAGAAGTTACACTGAGGAAATCTGCAGAGTGACATATTATGCCTCAGTATACCATATTTTCATTCTTAATCACAATCATGACCATTCCATGAAGATTAATTTATGAGCATTTTTTGACATGCAGTCAGTTGTAGTCTTAGGTTAGTGTAACTCCTTTGATGTTTAAATACATTTTTTGCATCTTTGCTTTACATAATAAAATTCCATTAAGTATGTGAGGCAGGTGTTGACAAGTGAAGAAATTTCCCCAGGCCACTCACTAAAAATTTGTTCATATTGACTAATTGGCAGACAATAAACATTTGATAAATGTTTAGTATCTGAAGGGCTAGAGTCCTTAGATATGTAAGTTCTCAAAAAATGTACAATAAATTGCATATAGCTACACAGTGCATTTTTCTGGAGAGACAGGGCATGTTTTTTTCTTCTAAGAGGAATGAATAATAATTAGTTTAATTAATAAACTATTAATTACATTTTGTAATTCAGGCCCTTAATAAGCAAGAGCTTCTTTATTTCCATGGACAGTAAAATGAACTTCAGTATATATAAGGAAAGCCTTCTTGGTAAAAGAATTGGCTGAAGAATAATATATTGTATTTCGTTTATGCTCGATAGCCATTTGCATTACTGTGTTCCCTGCTCTAATGGATATCTTGGTGTTCAGATTCCAGCATTGATGGATCAGATTATACAAATTTTACTTGTCAAAAAGGAAAGATGTGAATTTTTTTTTTCTAAAAAAGCAAAAACCTTTCTAAGACCAGAGGGAGTGTGGGTTTAATAGAGTTGCTGTGGTACCTTATTGGGAGGACTAAGCTGGAAGGAGTATTGATCAGAGAATATTTGATTTCAAGACCCAGTACAGCTCTCCAAATTCTGTTTGAAGCCACCATCAAAAAAAGAATACTCAAATATTTACTGGGCTAATTTAAAAATGTTGAGAAGGTAGTACTGATGCCTTAGCTTGCTACAGCCATCTTTTTGTACTTTCTGTCCTTCGTGGACCTTCTGTATTCTAACTGCTCTAAGAGACAGCTAACAATCTTCTTTCTTGATTTTACTTGCAG
Seq C2 exon
GTTTCAGAGATTAGACTATGTATATCTAAATGCTGGGATCATGCCTAATCCACAGCTAAATATCAAAGCACTTTTCCGTGGTCTCTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976:ENSBTAT00000007841:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(54.4=100)
A:
NA
C2:
PF0010620=adh_short=FE(24.8=100),PF0010620=adh_short=PU(9.7=34.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTAGCCCTCTGCAGG
R:
AAAAGAGACCACGGAAAAGTGCT
Band lengths:
286-1462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]