MmuINT0079156 @ mm9
Intron Retention
Gene
ENSMUSG00000026675 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
Coordinates
chr1:171895818-171897564:-
Coord C1 exon
chr1:171897361-171897564
Coord A exon
chr1:171895911-171897360
Coord C2 exon
chr1:171895818-171895910
Length
1450 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTTTGGTATTTTACTCGCAGGTT
3' ss Score
8.5
Exon sequences
Seq C1 exon
TGGCATTGGGCTAGCCCTTTGCGGTCGACTGCTGGCAGAAGACGATGACCTCCACCTGTGTTTGGCGTGTAGGAACCTGAGCAAAGCAAGAGCTGTTCGAGATACCCTGCTGGCCTCTCACCCCTCCGCCGAAGTCAGCATCGTGCAGATGGATGTCAGCAGCCTGCAGTCGGTGGTCCGGGGTGCAGAGGAAGTCAAGCAAAA
Seq A exon
GTATGTCTCTTTGTCATAGATTGCTGTCTGTCATAAAATTAATCAAATGAGAAAGGGCAGGAAAACATTCAAAGGTAATGGGCATAGCTTAAAAGGACTCTTCTTTCCTGTGTGGTAGTATAGCATGGCATTTAATCAAACTGGACAGGTCAGGGAAACATGGGAAGGTAATGGATATAGTATATATAGAACAAGTTGTGCTGAGGGAGTCTGACATAGTGATGACATTCGAGCCCTGAGAACTTGGATTTACCCTTTCCAGTTGGCAAAAGAACTGTTGTGTCGGACACTAGATCTGTATTCTGCTGTATTCTCCGTCCTGTTAGAACGCATTCAAAATGGTGATGCTGTTTTATCCAGAGAGAGATACTACGGCAATCCTTTCAATTTTGAATATATTAATTATGCTGCTTGATTGAAGCCAGAGCTTAATATCCACACTTTACTAAGCATTGCTTCTTCATGCCTAGCAAAATAACGTGTTATTACTAAAGTTTGTAAAGTAGATAATGCGATAACTAATCTGGCTTTACCTGCATGACACATAGTAGCTAAAGCAGCAACAATGTCACTACTTAAAGTAGCCATTTTAATAATTTCAACCATATGGTTGTTGTATGACCAAGAAGTACTGATTCATTATCCATATTGGCAACCAAATATATTTCAAGGTCTGGTTTTATCAGCTGTGGCTCTGTCCTGGGTCACAAAGCAGACAGGATGTGGTGCCTGAGATTCTGGGCGACACTCTGAGCATGAGTGTTGCCTGAGTGTCACGGGAGCAGGTACCGCCTGCCTGGACCCCACTTCCTAAGGGGTGTGCGTACATTAAGGCCTATGAAGTTTTAAAACTGAAAAAAAGCTCACTCACGGTTGCATTTCTCAACTCCTCCATGACACATATTCTGAAGCAAGCCTAATCCCCCCAGGGCATTTACGGTTTTAGGGTATGTGAGAGCGCAACCTTTAATCAGTTTATGATACGTAGTCTCCAGCCATGAGCTCCGCTGCGTGGTTTCCACTTGGGTCTTCTGTGTTGGTAGATTCCTGGTCATCCAGATTTCAGCACTGATAGGTCACGGCAGACCTGCTGGGCATTATGTGACTTTAACTTGCCAGCTTTGGAGGATATGAACTGGTAAAATAGATCAGGAGGAAGATGGGTTTGCTTGAGGGGTCTCCCGTGCTTGGTTGGGGGGCTGCAGTTGGATTTCTGTCTAGAGATTTAACTTCAAAGCCCTTTGGAACCACCCTGAGCCAAGATACTCAGGTGTCCGCTGTGGCTCGAGACACTGCCGAGGAAGAGCCATTGTAATGCCAGGTTTACATTGTGGCCATCTTCATTGGTTTGGAAAGGGTTTTTCTGTCCTCAGGCCTTCTGTGTTATAGTGTGGAGTACAGTTTTGTTTCATCTTTTCTAACAGTGCCATTTTTGGTATTTTACTCGCAG
Seq C2 exon
GTTTCAAAGATTAGACTACTTATATCTGAATGCTGGAATCCTGCCTAATCCACAATTCAACCTCAAGGCATTTTTCTGCGGCATCTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026675-Hsd17b7:NM_010476:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(66.7=100)
A:
NA
C2:
PF0010620=adh_short=PD(23.5=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTGCGGTCGACTG
R:
AAGATGCCGCAGAAAAATGCC
Band lengths:
278-1728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: