RnoINT0071969 @ rn6
Intron Retention
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88304615-88306330:-
Coord C1 exon
chr13:88306127-88306330
Coord A exon
chr13:88304708-88306126
Coord C2 exon
chr13:88304615-88304707
Length
1419 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTTGTATCTTACTTGCAGGTT
3' ss Score
11
Exon sequences
Seq C1 exon
TGGCATTGGGCTGGCCCTTTGCGGTCGGCTGTTGGCAGAAGACGATGACCTTCACCTGTGTTTGGCGTGTAGGAACCTGAGCAAAGCAGGAGCTGTCCGTGATGCCCTGCTGGCCTCTCACCCCTCCGCCGAGGTCAGCATTGTGCAGATGGATGTCAGCAACTTGCAGTCGGTGGTCCGGGGAGCAGAGGAAGTCAAGCGAAG
Seq A exon
GTGAGTCTTTTTTTGATGGATTGCTGCCTATCGTAAAATCAGTCAAATCAGAAAAGGCAGGAAAGTATGGAAAGTTAATGGCTATTGTGTAAAACGAGTGTGCTTTCTTATGTGGTACCATAGCATGGCTTTTAATCAAACTGGACAGGACAGGGAAATATGAAAAGGTAATGGGTATAGTGTATATAAAACGAGTCGTGCTGAGGGAGTCCGCACAGAATGGCGTTAGAGCCCTGAGAACTTGGAAATATCCTTTCCAGTTGGCAAAAGCACCATTCTGTCTGACACGAGGTCTGTGTTCTGCTGTATTCCGTCCCGTTAGAACACATACGAAATTGTGATGCTATTTTATCTGGAGATAGACACACACTATGGCAATCCTTTCGATTTTGAATGTACTAATTATGCTGTTTGATTGAAGCCAGAACTTAATTTCCACGCTTTACCAAGCATTGCTTCTTCGTGCCTAGCAAAATAAGCTGCTATCGCTAAAGTTCGTAAAGTAGATAATGTGTTAATTAATCTGAGGTCCCACTGGCTTCACTTGCATGACAAATGACAGCTAAAGCACAACACTGTCATTACTTAAAGTGGCCATTTTAGTAATTCGAGCCATGTGGTCATTGTATGATCAAGAAATACTGATGCACAGTCTCTGTCGTCAACCAAATATATATCTCAAAGTCTGGTGTTATTAGCTGTGGCTCCTGGGTCACATAGAAGACACGATATGGTGCCTAGGATTCTGGGAGACACTGAGAATGAGTGTCGCCTGAGTGTCATGGGAGCAGGAACTGCCGGCCTTGATCCCATTCCAAAGGGGTGCACATACATTCAGGCTTCTGAACTCATTTCTTGGCTCCTCCATGACACGTATTCTAGAGCAAGCCCACCGAGACTACCTAATTCCCCTAGAATATTTACAGTTTTAGGGCATGAGTTAACCTTTCATCAGTTTATGGTACATAGCTCCCGGCCATGAGCTCTGAGTGGTTTCCACTTGGGTCTTCTGTTTTGGTAGCTTCCTGGCCATCCAGATCACAGGGCAGGACCTGCTGGATATTATGTGACTTTAACTTGCCAACTTGGGAGGGTGCGAACTAGTGAAAAAGAGATCAGGAGGAAGATGGGTTTGATTGAGGGTACTCCAGTGCTTGATTGGTGGGCTGCAGTTGGATTTCCGGCTAGAGATTTAACATCAAAGCCCATGGAAACCACCCCGAGCAAAGGATACTCAGGTCCCCACTGTGGCTAGAGACACTGCCAAGAAAGAGCCATTGAAACCCCGATGTTACATTGTGGTCATCTTCCTTGGTTTGGAAAGGGTTTCTCTGTCCTTGGCCCTTCGGTGTACTAGAGGTGGAGTGCAGTTTTGTCCCATCTTTCCTAACAATGCCATTTTTTGTATCTTACTTGCAG
Seq C2 exon
GTTTCAAAGATTAGACTACTTATACCTGAACGCCGGAATCATGCCTAACCCCCAGCTAAACCTCAAAGCGTTTTTCTGTGGTATCTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826:ENSRNOT00000003812:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(55.7=100)
A:
NA
C2:
PF0010620=adh_short=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGCGGTCGGCTGTT
R:
TGAAAAGATACCACAGAAAAACGCT
Band lengths:
280-1699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]