RnoINT0151403 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93492513-93495127:+
Coord C1 exon
chr10:93492513-93492602
Coord A exon
chr10:93492603-93494957
Coord C2 exon
chr10:93494958-93495127
Length
2355 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
GCTGGTTTATGTGTCTTCAGGTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GCATGCGTGTAGGGAATACCGGATTCACAAAGAACTGGATCACCCCAGAATAGTGAAGCTGTATGATTACTTTTCACTGGACACTGACTC
Seq A exon
GTAAGTCCCACCCCTTCCCCTTACTTTATCTTCTTGACATAATGAATCCTTGTGGACTGGAGCTTAGATCTGATAATTTACAGGCAAATATTTATAACAATTCAGATTTGGATCAGCCAGACATCTCTTGACTAAAGGATAAGGACACTTGTATGCTGGTAAAAACTGTCTTGACAGAAAGTTAAGGTGATTGTCAGTATTTGTGGCATAAATATTTCCATTATGTCCAATGTTAAGATACCAACTTAAAAAATTAGCGAACTTTATTCTAATTTATATACCATAAGATTCATCCATCACAATTGAGTGGGTTTTCATGTGTGTCACAGATCTATATGGACATTATCCAAAATCATTTTGACGTTTTCACTCTCAGAAGAAACCTGAACCTTTTTACTGTCACTTCTCCATTTTACTCTCCCTCTGTTTAAGCAGACACTGCTATCTGTAACCTTAGAAATGGTGTTGGGAACAGTCTCACATGTGGAATCATGTAGTATGTGGTCCTTTGTAACTGATTTATTTCAGTTAACATGATGCTTATCCATCCATGTGTGTGTCTGTTGTCCTTATTTGTTTATCCCTTCTTACAGCCAGATTTATCAATTCTTCTTAGTCTTACATAGAGTTGTCTAGCCCAGCTCACAGTGTTCCTGAAAGCGTAGCAGTCAGTCCTTACCTAGGAACTGGTTCAGGCTGGTGCTGTCATGGCACTAGCAGGCCTAGTGATCGTGAGTATAGACTGTTGAAGAGAGCCTCAGCCCCACTCTGGAGACTGAGGAGCCCAGCCAGCCTTAAGTACCACAGTGTCCTAAAGCAGGAAGGTTTACGTGACAAAAGTAAAGAGAGCCCAGTGCTGCAGGTTGGAATACAGGTTCCTGGGCAATAGGATTTTAGAATTGGGAGGGGGTCTTAGGGTTCAGCCTTTTGGAGTATCAGAAAAACAAAATTATTTGTGTGAGATTTTGGTCCTCTTGATACCAAAACTCAGTAAACTGCAGCGCATTTGGGTTTATTCGGGGCTTAGGGATATTTCAGTGTTTGGAAACTTTTAGTTGCAGATAGGCCTGAGTCAGAAGAGCATAAGATCCCTTAGGCCTGGCCTGTAGATGGTACCTCAGTCTCCAAAGGATGTCCAGGAGTTTGGTCTATCCACCTGGAAGCTCTCTCAGACAAGCAGCCCATGTGTAGACATGTATCCAAGAAGAGGGTCTGACTCATTTCAGCATCTCAGATAAGAATGAGCATTTTGAACAGGCTCCCAGAGCATTGGCATGCCTTTTAGGTGTCATAAAAAGTATAGTTTATTGTTCAGTCCTGAGATTCTGCAAGTGTGTTTTTGTAGTCAGTTGCAGGGTGGCTTGAAGTTCAGCTTATAGCTGCTCACCGCTACCCCTCATTCCACTGCATTGGGAGGCATCTCTGGTAAGCCTTGTCAGTGGGTGTTCAGCTGGGTTGACCTAGTGGGTATGCACACAGCTCTGGTTTCCCTTGTGACCTGATTTCTCATAGCACCACCTTCATCCTCTGACCCTCTGGTTTTAAGCTGCTAACAGCTTCCTGCTGTAACTGGTCACTAGGGTGTCTTACTGGACAGTTTGTCCTTTTAGATCTTCAGCATACGAATCAAAGCCTCTGTCTTCAATATTCAAGTGGTTTTTATTCCCTGGTTAAGTCCTGACTGAGAAACCATAACCTAAAAATATTTTTTAAAGTATTTTTATCTCTCAGGAATATTCAAAAAATACAAGGAAACATCAATTTGAATAGTCGGGGGGATAGATGCGTTACTTGTAGTACCAACAATGGTGTGCAGTTTTAAATGGGGAATGAATGATATATTGACATAAATATGAGTAAAAGAATTCATACCATATGGAACACATTTGTGTAACCTTTTGCCAGACATAGTATACAACCAGTTCTTGAGACATGGGCAGAACCTAGACTCTTCCTTAGTGTATGCATTCGGTTTTAATAGACACATGCAAGGATAATCGTGTGATTGATCACTGTATAATAATGGACATGTGCTAAGGGTATTCAAAGGAGACCCTGCTATAAGAGGATGGCTAGCTCACACATTATAGTTCTTGTCAGTGTTCTTAGAAGAACTATGCCATAGTGAACTTTGGCACAGTTGATGCCAGTATGGAGATTGCAGAAGCTCATCTCCAAGAGAGCAGTTACCTCACCTCCTATAAGCTTTGGCGGCTGATGCAGAATAGAAGAGTGTTTTGGGAACAAAGAAGAAAGGAATAGAAGCTGTAATACCTGAGTTTTCACTGAGAGTGGTTTAGATAGTTTTAATCTGCTTTCTACTCCACTGTTAAATGCTGGTTTATGTGTCTTCAG
Seq C2 exon
GTTTTGTACAGTATTAGAATACTGTGAAGGAAATGATCTGGACTTCTACCTAAAGCAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATTATGCAGATTGTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.7=100)
A:
NA
C2:
PF0006920=Pkinase=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]