RnoINT0153276 @ rn6
Intron Retention
Gene
ENSRNOG00000046764 | Tmprss11a
Description
transmembrane serine protease 11A [Source:RGD Symbol;Acc:1596322]
Coordinates
chr14:23273790-23276247:+
Coord C1 exon
chr14:23273790-23273961
Coord A exon
chr14:23273962-23275987
Coord C2 exon
chr14:23275988-23276247
Length
2026 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
ATGCTGCTACTCTTTTCTAGCAA
3' ss Score
7.25
Exon sequences
Seq C1 exon
ATTGCGGCAAGCGAGCCATCCCATTAATTGCCAACAGAATAGTGTCTGGAAACCCTGCAGCCAAGGGTGCCTGGCCTTGGCAAGTTTCCCTTCAACGCAACAACATCCACCAGTGTGGGGGCACACTGATTGGTAACATGTGGGTCGTCACTGCAGCGCACTGCTTTAGAAC
Seq A exon
GTAAGTTATTGAAGTCAAGCCAGTCCTCAGATTTGCTTAAAACCTCCAGCATTTCCGTATTCTACTGCCAATCAAATCAAATCAAATCTTCCTGATTCTTGTCTAAAGGATGACGTTATACTTGCAAACTTATTAGGAATGTCTGGTATGAATAAAGGAGTGCTGAATAGTATCCCAGAATCCATTAATTAAGTCTTCAGGGTCTCACTAAAGGAATTGCATCGATAGCAGAACACAGCAATTTACTGATAAATCCAGCCCCTTATTAAGTAATGCTCTCCACGTAACATTAGCGCCTGTTTCATTAAGCACTTGGCCAGCCCCATGAGGATGCTAAGTAATAACCTGAAGATAAAGTCTTCAAGAAGGGCCGGGAGTGGGTGACCGTTGCTCAGGTCAAGTTTTAAAGCGCTGGCATTTGTAGCCAGAGTTCGATTGTGATTGGCATTACATCTTTTTTTTTTTTAAATCAAAGCCGGAATATATGACATGTGAGCCCTAAGCTGCCCAGATCTTACCTGGGAGAGTAAATTCTGAACTGGGTGGCATACTTAAAGAGAGCTTGACAGGATGGGATATCAATACAAAGTGTCAGATGACAAAGGGGCAGGCAGTACGCCATCTGCCTTGCCACTCAAAGGGCAGTTCATCAAGCAGCAGCGCCCACCTTTTTAATAAGAGCCCCAAATCATTGGTGTGCACATGAATACCTGGGAAACATCGCCCTCCATGATGCAATCTCATTCTGAGAAATCTCTCATACGGATCATAGAGTTGTATTAACTGATCTGAAGTCCTGTCCTGTTTCTGGAAGAGACTTAGAGAGTCAAGAAAGAACTTGCCAGCAGGCAGAGCTGCTCAAAGATGAAAGCGATGCCGAGGTGAACAAAGGGATTCCGAAGAGGAGCAAGCCTCCATGTGCAGAGGGATCAGGCAGAGGCAACGGAGAGTTGACGGTGGCTTCCCAGCAGCAACCAGCGCAGCTATGAAGCTCCACGGTGCTACAGGCACTTGATTAGACACTTCATATAATTCTTAGAGTCCTCCCTCCGTGTAAGGCCTGAGGGGGAAGCCCTTTCACTGAGATGTGAGTCTAGAAGTACTCAGAAGTACAGATTTATAAAACAAACAAACGATAGAAAATAGCATGTCATTGTTTATTGGAGATGTCACTTAACAACATAACAACAAAAACTACCCTGTTATCTCAATCTAATAGTGAGTAAACATGAGAAGTCATTACACGAAAGATTGACATCCCAAAGGGATGTTCTAGCATCAAAAGATATACATGCATAAGTGAGATACATAACTTCCATTTTGAAAACATCCAAGAATTCCACTATCCCTTAAATACTGCCTAAGCATTTTCTCTCTCCCTGTAAGAAACTCTGGTCCCTACCTACCTCCTTTTCCAGCATCATCTTCCACCGTTATCCCACTGGTGTTGTGAACTGAGACCCACCTGGAACCTTGTCTCCCGCATCATCTCCTAGCTGACTCCCACCACCAGCTATGTCTTATCCTAAATCTACTCTTTTTCAAAACAAAAAACCCAGTACCTTCCATATCCTCACACCGGTGCATTACTCATTGTCCTCTTTTAATTTTTTAGTCGTCTTCAGAACTCATATTATTTGTCAACATTTTAACGTATTTTATAATTTGTTTCTTTTCAACCAAAATACTCGAAGTTAAAATTTATGTTTTGTTCACTTGCTTCACATGCATGATTAATAAGTATTTGCTGAGGGAACAAGTGAATAATTTTGTATGTGCTTTATGGTCCTAAAACTCAATAATTAAATATTAAGTTTACCAGCAATGTTCTATTGGTATATGTTCTTATATTTAAGTCATGAGCAGCAGACATATTTAAATAGCCAATGAGACTATAATTACAACCAACTATTGTCAGGGTGGCAAGTTCCTTTGCATTAATTCACGTAATTGCTTGTTGTTAATTCATCTAGATGTGGAGTCAATGGATACTGTGCCTCTCATGTATGCTGCTACTCTTTTCTAG
Seq C2 exon
CAATGCAAACCCTCGCCAATGGACTCTTAGCTTTGGAACAACAATAAATCCTCCCTTAATGAAAAGAGAAGTCAGAAGAATTATTATGCATGAGAAGTATCGCCCTCCAGCCAGAGACCACGACATCGCTCTTGTGCAGTTTTCTCCCAGAGTCACCTTTTCAGATGAAGTACGCCGAATTTGTTTGCCAGAACCCTCTGCCTCGTTCCCACCAAATTCAACTGTCTACATCACAGGATTCGGAGCACTTTACTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046764:ENSRNOT00000075414:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]