RnoINT0153285 @ rn6
Intron Retention
Gene
ENSRNOG00000002002 | Tmprss11b
Description
transmembrane serine protease 11B [Source:RGD Symbol;Acc:1303278]
Coordinates
chr14:24105526-24106925:-
Coord C1 exon
chr14:24106751-24106925
Coord A exon
chr14:24105786-24106750
Coord C2 exon
chr14:24105526-24105785
Length
965 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATATGTTTTTGTTCCCTCAGGAC
3' ss Score
10.55
Exon sequences
Seq C1 exon
GCTGCGGGAGACGGCCAAGAATGTCGGCAACCTATGACAGAATCACGGGAGGCTCCACGGCTCAGAAAGGAGAATGGCCTTGGCAAGCGAGTCTCAGGGTGAATGGCAAACACCACTGTGGAGCATCTCTCATTGGCGAAAGATTCCTGCTAACAGCAGCGCATTGCTTTCTAAG
Seq A exon
GTGAGACGATCGTGTTCTCTGTTAGGGCAACCCAAGGAGCTGGATGGTCCTTGTCCTAGGCAAATTGTCTTCTATCCTCACAAGTGTTCTGGATCGGAAAAGCAAATTACTGATAAGCCTATCTCAGCCTTTTCTACTTTACCAATTAAAAATTGGGAAAGCCATTAGGTTTTTTTAATTGCTTCTTATGCCATTCATTTTTGATATACTTTTTTTTCTTACATGTGTCTTATTTCTCATCACTTTATACTTCAGATTCTAAACCACCTGCAGTTGCTAAAATACTACATCGCATCTCTTTTCTTCCTCTGTCCTATCACACACCTACCCAACATTTAAGCAACTGTGACTCAGTCTAAAATGCTGTTTTCTCTAAAAGGAGAAATTTCTTCTTTCTTAAGCATGGAGGTTTACATCCCCCTATTTATTGGTCTCATTAAGTATGTGTGCAGACATTAAGCATTTATGATTACCTGTGTATATGCTCAACTTGCATTAAATTTAAGCCTTTTAAAGACATATACTATATCCCTCTGTCTAGTGTACAGTGAAGAGATTCAAACAAGATGTTTTAAAAATGAATTTAAAAGTCGAATTGCATGGGGTTGGAGAGATAGGTAAGCATTTAAGATCACTTGCAGAAGAACTGGGTTTGGTTCCTAGCACCCATATGGCCACTCCCAGTTGTTCATAACTACAGTGACAGGGGATACAATACCATCTTCTCACCTCTAGGGGTTGTTCAAGATATGCATGAGGTGTATAGATATACATTCATGCTAGCAGAACACTTCTACGCATAAAAGCAATCAGAAAAAAAGAAAAATCAGACACCATTGCAGTGGGCTGTAATGCAAGGAAATATTGATGTCATAAAAGCATGCGGTAGACGTTGCTATGTACTGTAAATTGTAGTATTTCTGTCAACTAAAACCAAGCACAAAAATATGTTTTTGTTCCCTCAG
Seq C2 exon
GACAAATAATCCAAAGAACTTAACTGTTAGCTTTGGCACTAGAGTAACTCCAGCCTACATGCAGCATTATGTTGAAGAAGTTATTATCCATGAAGATTATGTTAAGGGGCAGCATCATGATGATGTCGCAATTATAAAGCTCACTGAAAAAGTTTCATTCAGGAATGACGTACATCGGGTTTGCCTCCCGGAAGCCACACAGGTTTTCCCACCAGGGGAAGGGGTCGTTGTTACAGGATGGGGATCACTTTCTTACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002002:ENSRNOT00000002743:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=74.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAATGTCGGCAACCTA
R:
GGCAAACCCGATGTACGTCAT
Band lengths:
347-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]