RnoINT0153298 @ rn6
Intron Retention
Gene
ENSRNOG00000055991 | Tmprss11d
Description
transmembrane serine protease 11D [Source:RGD Symbol;Acc:620654]
Coordinates
chr14:23365178-23366919:+
Coord C1 exon
chr14:23365178-23365296
Coord A exon
chr14:23365297-23366851
Coord C2 exon
chr14:23366852-23366919
Length
1555 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
TTCCCGTTTTCTTTCTACAGATT
3' ss Score
11.81
Exon sequences
Seq C1 exon
ACAAGAGAGCTTACTTTTATCATAGCAACTTTCATATCCTAAATGTTGACTATACTGAAGCTTTAAACTCACCAGCTACGCATGAATACAGAACCTTGAGTGAAAGAATCGAGTCTATG
Seq A exon
GTACGTTAATGCTTGTCTCTTTAATGTTTTTATTGTATTTTTTATCATTTTATTGAAAGCAAATGAGATTCTTCTCTCATGCCATACATCCAGACAACAGTTTCCATGCTTCTACCCCCCTAACCTCGACCTGACCTCTCCTCTTGCCCAGCTACATTTCCTCTCTGTTTCCTCTTCAGAAAAGAGAAATGAAGTGCACACATAAAGACATACACTCACACACACACACACACACACACACACACACACACACATGCAGTGCACCTGCAGACCAGTGTTATAGTAGATCATTCAGATGCTCAAAAACATTATTTCCTTTCTTCCTTGAACACTGAGCTTTCTGAATCTTTGAATTTCAAGAAAGTGGGATTGTATAACTTCTTGTATATTATATGATTGTATAATATTGTATATTATAATATGATAATAGACAGTAAAGAAGACCTCAAAACATCATCTCTGCTACTAACCTCACAGATAACAGGAAGCACTGTAGCTGTCAACTAATGTAAACTGGAAAAGGTGATTTATAGAACACACAAGCAGCTACAACAGTGTGTCTGTTCAAAACACCAAAAAAATGTGAGAATTATACTTTAATTCTATTTGTAATGCATTTAAATGACCTACTAAATTGCTAGTATAATGATGATCACTTATGTTTTGATGTGTTGGAATTTTCTTAAGTGATATAATTCATATTAGCCCTTAAAATTCATGAATATAACTGGAGATGATTCTAGAGTATTCTATAACATGAAAGGGTTGTTGGAAATGTCAGTCATGAGGAAAACACAAAATCCTTTCCTCTTCCTTGTTTACTTGATTTTTCCCAATGTTATAAAAACAGCAATAAAACAGGGTATAAAATGAAATGAATATAAAAATGAATTCATTTGAATAGTCTGATAACTTGAGCAGTTAATAAACATGATTCTGAAAAACTTGGTATCAAATCCCAGAATAATATAATTTTCAGCACATGCCTAATTCCTCATTTCTATATTCTTGTGTTGTATACACAAGGGTACAGCCTCGTGTTATAAGTGAAAGCCATCTATTCTCTGTTTTGAAATCACAATATAATTGACCCTGTACTGCAGGGATCTCTGATGAAGTATACGGCTTCTTCCTCCCCTTCAGATATCTCATCACTAGTCCTTCTAATTAGTTTTACCCTAATTTTTATTTCATCTATTCAAAACACAGTCATGTACCACACGCATATCAGAAGTTGTATGAAAGGATTCCCCAAGTGGCTTGAGTCGTGTTCCCAACTACCTGACTCACAGCTCCCAAATCATATATCAGGAGTGACTCGTATTAAAAGCACTCCCTTTCCAGATCATCTGTGCTTAATGGCTGCAAAATAGAAACCACATCAGAAGGTTGCATCATCTGCCTACATTGGCCCTATACTATCTGTGTCAAGACTGAGATGACCTCACCTGATAGATTTCTACCTCACGTTATAGAAGCTCCATGTCACAGATGTCAGAATGAAATAAAGAGACTGCAATTACAGTGAGATTGTTTTCCCGTTTTCTTTCTACAG
Seq C2 exon
ATTACTGATGCATTTCGAGAATCAAATCTACGAAGTGAGTTTATCAGGACACATGTTGTCAAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055991:ENSRNOT00000088552:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PU(34.9=95.0)
A:
NA
C2:
PF0139015=SEA=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]