RnoINT0153347 @ rn6
Intron Retention
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49642430-49646426:+
Coord C1 exon
chr8:49642430-49642602
Coord A exon
chr8:49642603-49646327
Coord C2 exon
chr8:49646328-49646426
Length
3725 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCTCAATGTCTTGTTGCAGCTC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GACCCGGGAGAAGATTCTGGAGGGGTGGAAGGTGTACGCAGGCACCAGCAACTTGCACCAGCTGCCTGAGGCTGCCTCTATCTCCCAGATCATCATCAACGGCAACTACACCGATGAACAGGATGACTATGACATCGCCCTCGTGAGGCTGTCCAAGCCCTTGACCCTGTCAG
Seq A exon
GTGAGCAAATGCGTGTCTCTGCTTCCCACCCTTGACTCAGCAGCCCCTGTTTACCCAGCCTAGGAACCCAGGGTGTCATCATCGCCGAGGCTGAAGAATTTCAGAGATCATCACGTGGAATGTATTTGTTTTCCAGGTAGAAAAACTGGGGTCTGGAGGAGATGACTCGGTGGGGAAAGTGCTGGCTGAACAAGAATGAGGACTTGCGTTCAGATCCCAGAACCCAAGGAAAGAGCAGGGCACGCTAGCATGTGTCTGTAGTGCCAGCACCGGGGAGCAGAGACGAGAGGGTGCCAGGGGTTTGATGGCCAACCAAAGCTTCTAGCTCCGTGCCTCTAAAACACAAGGTATAGAGGTGGTTGAGGAAAGACTTCAGTCTTAGGGCTTTACTGCTGTGAACAGACATGGTGGCCAAGGCAACTCTTATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAACATGGTAGTGTCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAACACACCTACTCGAACAGGGCCACCCCTACTCCAACAGGGACACACCTTCTAATAGTGCCACTCCCTGGGCTGAGCATATACCAACTATCACAATATCTTGACAAGAATCTTTGACCTCTATACATTTGCATGGGTGGCAGCACTCACACATGTCCGTATGTGCATGTCTGTACATGAGTGTCTATTTGATTGTATATGCATGTGTGTACACACACACACACACACACACACACACACACACACACACGAAAATATATAAGGGGAGGAAGAAAACACTAACTGGGGAAAGTTAGGTCCAAGATTTGGAATATACATGCCCCAAATGACACATCTCCTACTCCAAATCGGCCTCAAGGCTAGCTAGGGCTTGTATAGTGATCTTAATGAATACAACTAGATTGAATTGACTCATTTGTTAGTAACTTTGCACTTGAGAGCTGCCAGACAGTGCCCCTGTAGTGACAGAACACCTAATAAAAGCAATTCAAGGTCAGAAGGCTTTATTTTGGTTCTTAGCTTGAAGGGATACAGCCTATCACGGTGAAGCACAAGGCAGGTAGTTTCATGGCAGCAGGAGTGTGTAGCTGCTTTCTCATATCCAATGAGATCAGGAAGAAGTGGGGATGAGCAATAAACCTCGAGGTCCACCCCCTTAAACCTACTTCTTCCAGTGAAGACCACATCCTAAAGGGTCCACTACTTCTTAAAGCGGTGCCAGCAAGGTTTGTGGGGTCATTTTACACCTAAATTATAAACAGCCCAAACGGTCCAGAAGAGCAGAGCCTATGATCTCTATTTAACGTATGGAGAAGTATAGTTTTAGAAAGACATGTTAACTGAGGCATTGAGTGATAGACTCCTAGACGCTTGATAGGTCTCACTCCGAAGCAAGGTTCTCCCTTGGGCAAGCTAATGGCATACACTGCAGTGAAGAACATGAGTTGGCCACAGGTTTGAGTCTCCAATGGGGGAGCAAAAGGTCCAAATGAGGCTATGTGACAGAAAGATCACAGAGGTGCTCGGATCACTGGGGACACTGAATGTCAGAGAAGGTTTCATTCATCCACTCATTCATTCATTAGCTCTTTTGATTACCTCTTACTGTGTGTCGTCTATTATGCAGACAATGCCAAGTAGAAGAAAATGGGAAGTGAGCACCAAGACCTCCAGAAGGGGCTGATGATGTCATGTTAGGGGATCAGAAGGCGTTGACAAGGCAGTCAGACATGGTAGGCCAGTGGGCAGTGCAGAGGATAGCTAAGGTGACATCTGAAAGAACTGATGGGGCTGGGCAGATGACTCAGTGGCTAAGGGCACATGCTGCTCTATCTGAGGACCCAAGTCTCCAGCACCAAGTCCAGCAGCACACACTTCCTTTCACTCCAGCTCCATGGGAACTGGCAATCTCTTTTGGCCCCCATAGGCACCTGTACTCTTGTGTACATAGCCATACACAGACACAAATATATGTGTAATTAAAGATTAAAATCTTTAAAGGGACTTGTAAGGACAGGTTAAAGAGACTTAGAAGAGAGCCTGAAGAATAGGGCCAGGGCTGTCTACCATAAGAAAAAGTGAAGCACACACTTTTTCTCCTTTGGAGGACCAGGCTTACCAGAATCCTTGGAGAGCTCTGATTGGTCCAGACATGTCCGTTAAGGAAGCAATGTTTGTCATCCATCAGAGCCAGGTGAGGAGGAAAAGCCCTGGGCAGAGCTCTGAAGTAAAGGTGTCTTTGGACTGCTTCTCTATGGCCACACCCAGGCTCAGCTTTGGAGCCTACAGCCAAGCAGTGGTGGGGGATGGGGGAAGGGGGACCAACCAACCTTTTCCCCCCTTTCCCCTGCAACTCACACAAACAAACCATTAATCTGAGCAGGCCTTCTCAACCTTGTACAACTAACTCTAAAAACACTTGGTTAAAACATCTGAGTTACTCAGTTCCTCTCCTGGTGTGGATGTGTCCTGGGGCATGAAGCAAATCTTTCATCTAAGAACTACGGTTTGGGTCAGGCCATAAGCTCAGATTTTTGGTTTACAAATCAGGGCAGGATTTTCTTAAACTTAAACCAGCCTATGAAATGGTGCCAATCACGATGGACTGGGTTGTCTCCATCAATTAGCAGTCAAGGTAAACACATATGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACAGGCAACGCTCACAGGTCAACCTGATCTAGATAATTCCTCAGTTGAGATTCTCTTCCCAAGAGATGCCAGGTTATGGCGAGCTGACATCTGAAACTAACAACCTGAATTCTTCCCTCTCCCCTTGGTGCCCCCTCCACCCTCAAATGTTCACTGATCCCTGAGTCCGGGTCAGGCTGAGAAGTGGGTGTAGAATGCCGTAATGGATGTGACAAATGACCGAGGATACCACAAAATTCTACCAGTGAATGTTCTCCTCTTGTAACTCAGAGTTGAGAGCATCTAAGGGGATCCCATGCCAGGGGAGCTTAAGAAGCGATACACAGAAACACTTGATAGATAAAGCCCACGTGAGAGTTAGTTAGCCTGGGGTGTGTGGTCTCAGTCTTTAAGGTATGTACTCTCCCTGCCTGCAGGGTTTACTTTCTCTGTGTCAGATGAATGTTTAGACAGAGAGTCCCCAGTGGTGGCCATCCAATATGTGCGTGCCTGGATCAGGTGACATCCAATATGGCCCTAACAACTTACCCTCCATTGTCAATGCTTTGAGGGAAAGGTCTAGAAGAGTCTTAGCCAGGAGAGCTGCTCTTGATGGAGACACTGTCTTCTACTTGGTGTCAGCTTGGCTCAAACAACCTCCCAAAGCTGTCTGTCTGTGTACACAATAGCCCTGGAAGAAGAATGGCTTCCTAGGTGCTGACAATCCACACTGATGGCTGCAAGGTTCAGATGAAATGACTGACTTGCATATCCAGTCGTTCCAAAGCTTTGGCGGATTCAGAGCCACTGAGAGAGCAAGGATGTAGATAGATGCTCTGCCCCATCCATGTCCCTCTACCCTAAACCCCAGCCTTGCTTCTCTGACACCTCAATGTCTTGTTGCAG
Seq C2 exon
CTCACATCCACCCTGCCTGCCTCCCTTTGCATGGGCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACTGGCTTTGGCAAAACCAAGGAAACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397:ENSRNOT00000021949:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]