RnoINT0153375 @ rn6
Intron Retention
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38067991-38068719:-
Coord C1 exon
chr11:38068544-38068719
Coord A exon
chr11:38068087-38068543
Coord C2 exon
chr11:38067991-38068086
Length
457 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTGCTCCTCTTTACACAGATG
3' ss Score
9.76
Exon sequences
Seq C1 exon
ACCCCTCAGCAGCCCTAGGTACTGGACGGCATTTGCGGGAATTTTGAAACAGTCTCTCATGTTCTATGGAAGTAGACACCAGGTAGAAAAAGTGATTTCCCATCCAAATTACGACTCTAAGACCAAGAATAATGACATTGCTCTCATGAAGCTGCAGACACCCTTGGCTTTTAATG
Seq A exon
GTATGTGAGATTCAGCCCACTAGAGGGCAGTAGCATCCCCGGGTTGTGTGGGTCAGAGCTGGCTTCAAACAACACTTAGTGTCCCTGTGGATTCTCTTCAGCTGAGGTCATCTGGTTGATAATTTGTAAAGATTACTGGTTTTAAAAATGTTTAATTTTTAACTTAACTTTTAAATTTATTTTTATTTTATTATATTTATATTATTTTATTATTTTAATTAATTTTTAAAATTTAGTTTATGTGTACGGGTGTTTTGCCTACAAGTATGTCTGTGTACCACTTCTGTGCCTGGTGCCCATAGAGGCCAGAAGAGGGTGTCAAATTCCCTGGGACAGTTGTGAGCCAGCATGTGAGTGTTGGGAATCAAACATAGGTCCTCTGGAAGAGCAGCCAGTGCTACTGAGCTCTCTCTCTCAGGACAACTGATAAACTCACGTTTTGCTCCTCTTTACACAG
Seq C2 exon
ATGTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTGGACCTAGCCCAGGAGTGCTGGATTTCAGGGTGGGGGGCCACCTATGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976:ENSRNOT00000002713:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGCAGCCCTAGGTAC
R:
CTTTCTCATAGGTGGCCCCC
Band lengths:
270-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]