RnoINT0153456 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11684733-11685560:-
Coord C1 exon
chr7:11685389-11685560
Coord A exon
chr7:11685005-11685388
Coord C2 exon
chr7:11684733-11685004
Length
384 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
CTGAGGTCCTGTCTCTGCAGCAC
3' ss Score
7.68
Exon sequences
Seq C1 exon
AGTGTGGGGCCAGGCCCGCGATGGACAAGCCCACTCGCATTGTGGGCGGGATCAGCGCCGTGTCCGGGGAGGTGCCCTGGCAGGCCAGCCTGAAGGAAGGATCCAGACATTTCTGCGGAGCCACCGTGGTGGGTGACCGCTGGCTGCTGTCCGCTGCCCACTGTTTCAACCA
Seq A exon
GTAAGGCCTCCCAAGAGCCCCACGATAGCAAACCCTCAATGCATGCAGCAAACACCAACTAGCTAGTGCGGTGCTTTCCTGTCAGCCATGGCTCAAAGTTGACAAACCAAACCAAGCAAGACAACAAACAGGAAGTGCTTACTGCTCGCTGAATGCTCATGCCTGGGGGGTTATTCAGAGCCACAACCATCTGGCTCTGGCTCCACAGCAGGGGGATTCTGACTTTCAGTAACCTACAACATTCATAAAGTTGCTAGGGTCTCGGCCAGAGTGGCAGAGTCCCAAGGGTGCATGCACTCTCCCCCAGGACCTTTTCGTGGGGACACAGCAGCTGGGCCCTCCCTGGGGTGCGGGGTGGGAGAGTCTGAGGTCCTGTCTCTGCAG
Seq C2 exon
CACCAAACTGGAACAGGTGCAGGCGCACTTGGGCACCGTGTCCCTGCTGGGTGTCGGCGGGAGCCCCGTGAAGCTGGGGCTGCGAAGCGTGGCCCTGCACCCCCGCTACAACCCAGGAATCCTGGACTTTGACGTGGCCTTGCTGGAGTTGGCCCAGCCATTGGTCTTCAACAAGTACATCCAGCCAGTCTGTCTCCCGCTGGCCATCCACAAGTTCCCCGTGGGCCGGAAGTGTATGATCTCGGGATGGGGCAACATGCAGGAGGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCTGAAGGAAGGATC
R:
TTGCCCCATCCCGAGATCATA
Band lengths:
344-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]