DreINT0165413 @ danRer10
Intron Retention
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10737479-10738002:+
Coord C1 exon
chr22:10737479-10737647
Coord A exon
chr22:10737648-10737736
Coord C2 exon
chr22:10737737-10738002
Length
89 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGAA
5' ss Score
0.82
3' ss Seq
TTTGTGTGTTTTGTTAATAGTGA
3' ss Score
6.53
Exon sequences
Seq C1 exon
ACTGTGGGAATCGTCCAGCAGTGACCCAGGAGAGGATTATTGGTGGTGTCACTGCCCGGCGAGGTGAATGGCCATGGGTGGGCAGTCTGCAGTACCAACGCATTCATCGCTGTGGAGCGACACTTATCCACTGCAAATGGCTCCTAACCGCCGCTCACTGCTTCAGAGG
Seq A exon
GTAGAACACCTATCCAGCATGATCTGTTTCAGGCATAGAAAAAAATGAACAGGGAATGTTTAGTTTTTTTTTGTGTGTTTTGTTAATAG
Seq C2 exon
TGACCTGAATCCTGCTGGTTACACGGTGAGTCTAGGCTCGGTCATTTGGTCTGGGTTGGGTGCTCTGGTGATCCCAGTGCAAAGGATCATCCCTCATCCTGCTTTCAATAGCAGCACCATGGACTTGGATGTGGCTCTGGTGGAAATTTCCATCCCTGCCCCCAAATCCTACACCATCCAGACTGTGTGTTTGCCTTCTCCCTGGCACAGCTTCATCAAATCTATGGAATGCTACATTATTGGATGGGGCGCTGTGAGGGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841:ENSDART00000145551:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=77.2)
A:
NA
C2:
PF0008921=Trypsin=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAATGGCTCCTAACCG
R:
GAGCCACATCCAAGTCCATGG
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]