RnoINT0153310 @ rn6
Intron Retention
Gene
ENSRNOG00000022255 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr14:23101559-23102897:+
Coord C1 exon
chr14:23101559-23101739
Coord A exon
chr14:23101740-23102637
Coord C2 exon
chr14:23102638-23102897
Length
898 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TATTTATTTATTTTTGGTAGGCA
3' ss Score
5.22
Exon sequences
Seq C1 exon
GTTGTGGGACACGGCGGAACAAATCTACAGCACAGACAAGTGTGAGGATTGTCGGCGGGACATCAGCCGAAGAGGGAGAATGGCCTTGGCAAAGCAGCCTGCAGTGGGATGGGTCTCATCGCTGTGGAGCAACTTTGATCAGCAACACGTGGCTTGTGAGTGCCGCTCACTGCTTTCGAAC
Seq A exon
GTAAGTCGGGACCTTTGAGGAGGGGGCCAAAGAAAAGTGAATGTGATTTTACATTTTATGTTCATAAAACAGTTGATGAATTTTTGAGAAAGTTTGGCACAAACGGAAGATAACATGCTTATCACAAAACAATGGGGATCTCCAAAGAGGTTCTTCGGTCTCTGGAAATGAAAGTGTTTCCAAAGTACACTGGGGGGTAGTTACTCATTGATCAGTTGATGATACTTTGCTAAAGAATAAGGAACTTTAGGTCCTGTTTGAATTTTGAGCTTGTTTTCACAGAGAGCAACTGATAGTCACTGAGTATCCTTCTCAGAACCGAAGGTTGCACAGATGGTAGGTTTGATCACCAGAAGGATAGTACGAGAAAAAAGATAAGGAAGTATGAAACAAGTTCAAAGTAACAAACTTTATAACTGAACAGGTGATTTATTTTAGAAGGAGTGTTGAATTTTTAACCTGGCACCAAAATATTTACAATATACACCATAGTAGATCATTTTAAAGTTATCTTTGACCACTATGGACTTCAGAAAAATATATATCCTTGTAGGGAGAGGATGTGGGCATGTAGAATGTATTTACTGTCATTCAATGCAAGATTTTCTTTGTATGTGTTGCTTGTAGCCACTGATGGCAAAGACCTCTGGATGTGTGTGGACATCATGGTGCATGGGGTTCCATTTGACCTAGGAAAAACACTGTGGTTTTTCTGCCTGGCCTGAACACAGAGCTCAGCTCTCAGACTAGAAAGAGTTTATTTCTGTTGATATGAACTATGACAAAAATTATCTGATACTTTCAGATAAAACCATTCCTTATAAATTATTGCATTGATATCAAGGTAAGCTATAATCTATTATTACTGTTATTTTATTTATTTATTTATTTTTGGTAG
Seq C2 exon
GCACAAGGACCCATCCAGATGGACTGCTAGCTTTGGGGCCACATTACAACCTCCAAAATTGACAACAGGCATCCGGAGGATAATTGTTCATGAAAAATACAATTACCCATCACATGACTATGACATTGCACTTGTAGAGCTGTCTAGGCCGGTTCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCTGATGCAAACCATGAATTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAGAAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022255:ENSRNOT00000036948:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=72.1)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGCCGAAGAGGGAGAA
R:
GTCACAAACATCCTCTGCCCC
Band lengths:
356-1254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]