HsaINT1044664 @ hg38
Intron Retention
Gene
ENSG00000087128 | TMPRSS11E
Description
transmembrane protease, serine 11E [Source:HGNC Symbol;Acc:HGNC:24465]
Coordinates
chr4:68476261-68477628:+
Coord C1 exon
chr4:68476261-68476438
Coord A exon
chr4:68476439-68477368
Coord C2 exon
chr4:68477369-68477628
Length
930 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CTTCATTTTTTTCTCCCCAGATA
3' ss Score
10.94
Exon sequences
Seq C1 exon
GCTGCGGAACACGAAGAAGTAAAACTCTAGGTCAGAGTCTCAGGATCGTTGGTGGGACAGAAGTAGAAGAGGGTGAATGGCCCTGGCAGGCTAGCCTGCAGTGGGATGGGAGTCATCGCTGTGGAGCAACCTTAATTAATGCCACATGGCTTGTGAGTGCTGCTCACTGTTTTACAAC
Seq A exon
GTAAGTCTTGAAGCTTGAGAATGATTGGGAGTGAACAAAGTGCACTGGGTTTTGGCAAGAAAATACCTCATGAATTTTGGGAGATATGAGTTTAGCATAAATTAAAAATAGTGTGTATATCACAAAAGACTGGATCATTTGTAAACATTAGTAAGAGGTTTTAAAGTCTGGAAATGGAAATGGAGTCAAAGTATATGTAAATAAATAATCTTTTGATAAACACACAATAGTTTCTCAAAGAAAGCAGGAATTTTAAAGTCATTTTTGGATTTGAATTTGCTGTCAAACAGGAGTGCTCTATCTCTGCTGAGTACCTTAATCAGAGATGGAGTCTGGATAGGTTGTAGGTTTGATCCTAAGGGGGAAATTTCACATGGTAAGAAAAAGAATTAAATACGAAGAATTATGTAATGAAGATATGAAGAATTTGGAAGTAGCAAGTTGTATAAATGAATAGATTGACTAATTATATTGCAAGAAATGGAGGACCCTTCAATCTATTGTCAAAATGTCTATAGTATATAAAATAATAATACTTTGTTAAATTATTGTGTGGACTTTTTGGTTTTCAGAGAAATGTGTATATTTCTGGGTGGGGTACATGAGACACATAGAATATATTAATTTCTCTTATTCTGTACAGGGTACTTTCCATAGGTCCCTTGGAGTCATTAATATACAGAAAAATCAAAAAGCCTTAGCATTTGGAGTGGATGACTTGGCATATGGAGTGGCATGTATATTATAGGAAATGGTGGCTTTTTCACCTGGTCAGAACCCTGAGCCTTATTATCAAATTGGAAAGAGTTCTATACATCAAAACTATAAAAAGAAAAAAAAATCTACACCTGTAGACTAAATTATTTAATATAAATTATTCGACTGGTAGCATGGTAAAAAGAAATTTATTCTTCATTTTTTTCTCCCCAG
Seq C2 exon
ATATAAGAACCCTGCCAGATGGACTGCTTCCTTTGGAGTAACAATAAAACCTTCGAAAATGAAACGGGGTCTCCGGAGAATAATTGTCCATGAAAAATACAAACACCCATCACATGACTATGATATTTCTCTTGCAGAGCTTTCTAGCCCTGTTCCCTACACAAATGCAGTACATAGAGTTTGTCTCCCTGATGCATCCTATGAGTTTCAACCAGGTGATGTGATGTTTGTGACAGGATTTGGAGCACTGAAAAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087128:ENST00000305363:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=73.3)
A:
NA
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGGATCGTTGGTGGGA
R:
AGGATGCATCAGGGAGACAAAC
Band lengths:
342-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains