GgaINT0144387 @ galGal3
Intron Retention
Gene
ENSGALG00000000458 | F1NP62_CHICK
Description
NA
Coordinates
chr28:606733-607627:+
Coord C1 exon
chr28:606733-606749
Coord A exon
chr28:606750-607340
Coord C2 exon
chr28:607341-607627
Length
591 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTGCAAGCACATGTATTCAGACT
3' ss Score
-1.73
Exon sequences
Seq C1 exon
CAGCTCTTAGAGAGAAG
Seq A exon
GTGGGCAGTTCATGATGCAGTCCATTGACGTGACCTATAGATGGCCTAGCACAGAGCATGGGTAGCAAGAGCACAATGTTTGCCAACAACAATAAATCCTGAAAGCAAAAAAGGTGGGGAGATCAGCTGGGAGTTCCAGGAGGACCTCATGTGTTAAAACAGCTGGGCAGGAAAACAGAAAGTGAAACAAGCAGCTCTGCATCGTTAAACAGTGGACCTTTTCACCGTATGAAGTGATGAATGTTTGAAGTTCACATGGGGTTAAAAAATGAGAAAACAACTAGAAAAAACACTAATAGAAGCCACCCATCCAGGGATTCTGGGTATAAACACCATCTGCATGCTGCTGTGCTCCTCAGGTCACACATGTTGGGGCTGGGGGAGGATTACCACACACTTTCCTGCTCTTCAGCACACATCCAACAGGTGCCACTGCTGGAGGCAGAATTCTGGGGGCACATCTGTGTGCTCTGGGCTTTCCTTTGGCAAAGCGAGGCTTCAAACACCAACCCTTTAATGCTGCCTGCAATTTAAATGGCCTGCCAGCTCAGAATTCGGGATAGGTGTATGTGTGCAAGCACATGTATTCAG
Seq C2 exon
ACTGTGCATTTACAGGACAAATCCGGAAGAGATTGAAGCCTACATGGGAACGACATCACTAAATGGAACAGATGGGAGCGCAGTGAAAGTCAATGTAACACGAGTGATCCCGCATCCTCTCTTCAACCCCATGCTTCTGGACTTTGATGTAGCTGTACTTGAGCTGGCAAGACCCCTCGTCTTCAACAAATACATCCAGCCCATCTGCCTCCCTCTCGCTGTGCAGAAGTTTCCTGTTGGCAAGAAATGCATAATTTCTGGGTGGGGAAACCTCCAAGAAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458:ENSGALT00000000620:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(2.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]