GgaEX0028304 @ galGal3
Exon Skipping
Gene
ENSGALG00000000458 | F1NP62_CHICK
Description
NA
Coordinates
chr28:603326-607627:+
Coord C1 exon
chr28:603326-603497
Coord A exon
chr28:604760-605078
Coord C2 exon
chr28:607356-607627
Length
319 bp
Sequences
Splice sites
3' ss Seq
CACCTGGGCTTCTCTTGCAGGGG
3' ss Score
9.56
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGTGGGAGCCGCCCTGCCATGCAGACTGCCAGCAGGATAGTCGGAGGCACAGAGGCATCCAGAGGGGAGTTCCCCTGGCAGGTCAGCCTGCGAGAGAACAACGAGCATTTCTGTGGTGCTGCAATCCTCACGGAGAAGTGGCTGGTGTCTGCTGCTCACTGCTTTACCGA
Seq A exon
GGGGACTCCGGTGGGCCGCTGGTTTGTGAAGAACCATCTGGCAAGTTTTTCCTGGCAGGAATCGTGAGCTGGGGAATAGGATGTGCTGAAGCCAGGCGGCCAGGGGTTTACACACGCGTTACCAAACTGAGAGACTGGATCTTGGATGCTATTTCTCCCTTTCCCACCTCCATAACACGCACCGTCCCACTAACACACTCCAGTACTAACAGTAACGTGGTCACACCTGAAGAACTCAGCGCCACCACCAGCACAGCAATCCCCACCTCTTCACCAGCCCTGGCTGCCAGCAAACCAGCAACTGCACCCAGACCACAAG
Seq C2 exon
GACAAATCCGGAAGAGATTGAAGCCTACATGGGAACGACATCACTAAATGGAACAGATGGGAGCGCAGTGAAAGTCAATGTAACACGAGTGATCCCGCATCCTCTCTTCAACCCCATGCTTCTGGACTTTGATGTAGCTGTACTTGAGCTGGCAAGACCCCTCGTCTTCAACAAATACATCCAGCCCATCTGCCTCCCTCTCGCTGTGCAGAAGTTTCCTGTTGGCAAGAAATGCATAATTTCTGGGTGGGGAAACCTCCAAGAAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458_MULTIEX1-3/7=C1-5
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.411 C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
PF0008921=Trypsin=PD(20.1=43.0)
C2:
PF0008921=Trypsin=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATAGTCGGAGGCACAGA
R:
AAACTTCTGCACAGCGAGAGG
Band lengths:
355-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]