GgaEX0028305 @ galGal3
Exon Skipping
Gene
ENSGALG00000000458 | F1NP62_CHICK
Description
NA
Coordinates
chr28:603326-607627:+
Coord C1 exon
chr28:603326-603497
Coord A exon
chr28:605733-605815
Coord C2 exon
chr28:607356-607627
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTGGCTTTCGTTCAGAGT
3' ss Score
6.45
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ACTGTGGGAGCCGCCCTGCCATGCAGACTGCCAGCAGGATAGTCGGAGGCACAGAGGCATCCAGAGGGGAGTTCCCCTGGCAGGTCAGCCTGCGAGAGAACAACGAGCATTTCTGTGGTGCTGCAATCCTCACGGAGAAGTGGCTGGTGTCTGCTGCTCACTGCTTTACCGA
Seq A exon
AGTGCGGAGGACGACCTGGCCTATCTAAACCCAACAAGATTGTGGGAGGAACCGATGCTTCCAGAGGGGAGATCCCCTGGCAG
Seq C2 exon
GACAAATCCGGAAGAGATTGAAGCCTACATGGGAACGACATCACTAAATGGAACAGATGGGAGCGCAGTGAAAGTCAATGTAACACGAGTGATCCCGCATCCTCTCTTCAACCCCATGCTTCTGGACTTTGATGTAGCTGTACTTGAGCTGGCAAGACCCCTCGTCTTCAACAAATACATCCAGCCCATCTGCCTCCCTCTCGCTGTGCAGAAGTTTCCTGTTGGCAAGAAATGCATAATTTCTGGGTGGGGAAACCTCCAAGAAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458_MULTIEX1-4/7=C1-5
Average complexity
C3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.450 C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
PF0008921=Trypsin=PU(11.4=65.0)
C2:
PF0008921=Trypsin=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCTCACGGAGAAGTGGC
R:
AGCATGGGGTTGAAGAGAGGA
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]