RnoEX6030444 @ rn6
Exon Skipping
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11684733-11688275:-
Coord C1 exon
chr7:11687957-11688275
Coord A exon
chr7:11685389-11685560
Coord C2 exon
chr7:11684733-11685004
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTCCCCTGGCAGAGT
3' ss Score
11.11
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGTGACTCCGGGGGACCCCTGGTCTGCGAGGAGCCTTCCGGAAGGTTCTTCCTGGCTGGTGTCGTGAGCTGGGGAATCGGCTGTGCAGAAGCACGGCGCCCAGGGGTCTACACCCGAGTCACCAGGCTGCGGGATTGGATCTTGGAGGTGACCAGCTCGGCTGACACGCCCGTGGTCCCCACCGAGGCTCCAGCACCCATCACCCCCAGCACTCCCTGGCCTACCAGCCCCGAGAGCCGGGTGCCCAACACCACTGCTAAACCCACCGTTGCCCCCACCCCTGCGCCACTGCACCCCAGCACTGCGGCCAAGCCACAAG
Seq A exon
AGTGTGGGGCCAGGCCCGCGATGGACAAGCCCACTCGCATTGTGGGCGGGATCAGCGCCGTGTCCGGGGAGGTGCCCTGGCAGGCCAGCCTGAAGGAAGGATCCAGACATTTCTGCGGAGCCACCGTGGTGGGTGACCGCTGGCTGCTGTCCGCTGCCCACTGTTTCAACCA
Seq C2 exon
CACCAAACTGGAACAGGTGCAGGCGCACTTGGGCACCGTGTCCCTGCTGGGTGTCGGCGGGAGCCCCGTGAAGCTGGGGCTGCGAAGCGTGGCCCTGCACCCCCGCTACAACCCAGGAATCCTGGACTTTGACGTGGCCTTGCTGGAGTTGGCCCAGCCATTGGTCTTCAACAAGTACATCCAGCCAGTCTGTCTCCCGCTGGCCATCCACAAGTTCCCCGTGGGCCGGAAGTGTATGATCTCGGGATGGGGCAACATGCAGGAGGGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429-'10-13,'10-12,14-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.172 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Skipping Isoform:
ENSRNOT00000049221fB15392
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCACTGCTAAACCCACC
R:
ACTTGTTGAAGACCAATGGCTGG
Band lengths:
249-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]