HsaEX6091723 @ hg38
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2413700-2418138:+
Coord C1 exon
chr19:2413700-2414018
Coord A exon
chr19:2415670-2415841
Coord C2 exon
chr19:2418002-2418138
Length
172 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTGTCCTCCTTCCAGAAT
3' ss Score
10.8
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGTGACTCAGGAGGACCCCTGGTCTGCGAGGAGCCCTCTGGCCGGTTCTTTCTGGCTGGCATCGTGAGCTGGGGAATCGGGTGTGCGGAAGCCCGGCGTCCAGGGGTCTATGCCCGAGTCACCAGGCTACGTGACTGGATCCTGGAGGCCACCACCAAAGCCAGCATGCCTCTGGCCCCCACCATGGCTCCTGCCCCTGCCGCCCCCAGCACAGCCTGGCCCACCAGTCCTGAGAGCCCTGTGGTCAGCACCCCCACCAAATCGATGCAGGCCCTCAGTACCGTGCCTCTTGACTGGGTCACCGTTCCTAAGCTACAAG
Seq A exon
AATGTGGGGCCAGGCCTGCAATGGAGAAGCCCACCCGGGTCGTGGGCGGGTTCGGAGCTGCCTCCGGGGAGGTGCCCTGGCAGGTCAGCCTGAAGGAAGGGTCCCGGCACTTCTGCGGAGCAACTGTGGTGGGGGACCGCTGGCTGCTGTCTGCCGCCCACTGCTTCAACCA
Seq C2 exon
CCACCAAGCCCGAGCTCCTGCAGAAGGCGTCCGTGGGCATCATAGACCAGAAAACCTGTAGTGTGCTCTACAACTTCTCCCTCACAGACCGCATGATCTGCGCAGGCTTCCTGGAAGGCAAAGTCGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297_MULTIEX1-1/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGTGACTGGATCCTGGA
R:
CTGGTCTATGATGCCCACGGA
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains