BtaEX0037187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22465062-22467932:-
Coord C1 exon
chr7:22467614-22467932
Coord A exon
chr7:22466489-22466660
Coord C2 exon
chr7:22465062-22465198
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCTTGTCCCTGCAGAGT
3' ss Score
12.13
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGTGACTCGGGGGGCCCCCTGGTCTGCGAGGAGTCCTCCGGCAGGTTCTTCCTGGCTGGCATCGTGAGCTGGGGAATCGGCTGTGCGGAAGCCCAGCATCCAGGGGTCTACGCCCGAGTGACCAGTCTGCGGGACTGGATCCTGGAGACCATCGCTTCTGCAAGCAAGCCTCCAGCCCCCACAGTGGCTCTCGCCTCCACCACTCTCAGCACTGCCTGGCCCACCAGCCCCAAGAGCCTGGTGACTGACACCCTCACCAAACCCACACTGGCCCCTAGCACTATGCCTCTAGACTTGGCCACTGCTTCTAAGCCACAAG
Seq A exon
AGTGTGGGGCCAGGCCAGCGCTGGAGAAGCCCACTCGGATCGTGGGGGGGCTTGGGGCCTCCTTGGGGGAGGTGCCTTGGCAGGTCAGCCTGAAGGAGGGCTCGCGGCACTTCTGCGGAGCCACCGTGGTGGGGGACCGCTGGCTGCTGTCTGCCGCCCACTGCTTCAACCA
Seq C2 exon
CCACCAAGCCTGACCTCCTGCAGCAGGCGTCTGTGGGCATCATAGACCACAAGGCATGTAGCGCCCTCTACAACTTCTCGCTCACGGACAGGATGATCTGCGCCGGCTTCCTGGAGGGCAAGGTGGATTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGGATCCTGGAGACCAT
R:
GCCTTGTGGTCTATGATGCCC
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development