RnoEX6041990 @ rn6
Exon Skipping
Gene
ENSRNOG00000022255 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr14:23099882-23102897:+
Coord C1 exon
chr14:23099882-23099920
Coord A exon
chr14:23101559-23101739
Coord C2 exon
chr14:23102638-23102897
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTGTCTTCTTGGCAGGTT
3' ss Score
10.15
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
AAATCAACAAGACAGAATCAGACAACTATCTCAACCATT
Seq A exon
GTTGTGGGACACGGCGGAACAAATCTACAGCACAGACAAGTGTGAGGATTGTCGGCGGGACATCAGCCGAAGAGGGAGAATGGCCTTGGCAAAGCAGCCTGCAGTGGGATGGGTCTCATCGCTGTGGAGCAACTTTGATCAGCAACACGTGGCTTGTGAGTGCCGCTCACTGCTTTCGAAC
Seq C2 exon
GCACAAGGACCCATCCAGATGGACTGCTAGCTTTGGGGCCACATTACAACCTCCAAAATTGACAACAGGCATCCGGAGGATAATTGTTCATGAAAAATACAATTACCCATCACATGACTATGACATTGCACTTGTAGAGCTGTCTAGGCCGGTTCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCTGATGCAAACCATGAATTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAGAAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022255-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.115 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=72.1)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAAGACAGAATCAGACAACT
R:
CCCCGGCTGAAATTCATGGTT
Band lengths:
253-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]