BtaEX6081637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003829 | HPN
Description
Bos taurus hepsin (HPN), mRNA. [Source:RefSeq mRNA;Acc:NM_001080241]
Coordinates
chr18:45985786-45986663:+
Coord C1 exon
chr18:45985786-45985826
Coord A exon
chr18:45986206-45986371
Coord C2 exon
chr18:45986473-45986663
Length
166 bp
Sequences
Splice sites
3' ss Seq
GACTGCCCCTCTCCCCACAGACT
3' ss Score
12.06
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CGACTGTCCCAGAGGCCGTTTCCTGGCTACCAGCTGCCAAG
Seq A exon
ACTGTGGCCACCGAAAACTGCCGGTCGATCGCATTGTGGGCGGCCAGGACACCAGCCTGGGCAGGTGGCCGTGGCAAGTCAGTCTTCGCTATGATGGAGCACATCTCTGTGGGGGGTCCGTGCTCTCTAGGGACTGGGTGCTGACAGCCGCCCACTGCTTCCCTGA
Seq C2 exon
GCGGAACCGGGTCCTATCACGATGGCGAGTGTTTGCTGGTGCTGTGGCCCAGACTTCACCCCATGGCGTGCAACTGGGGGTGCAGGCTGTCATCTACCATGGGGGCTATCTCCCCTTTCGAGACCCCAACAGCGAGGAGAATAGCAATGACATCGCCCTGGTCCACCTCTCCGGCACCCTGCCCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003829-'15-16,'15-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF092725=Hepsin-SRCR=FE(12.7=100)
A:
PF092725=Hepsin-SRCR=PD(6.4=12.5),PF0008921=Trypsin=PU(18.5=78.6)
C2:
PF0008921=Trypsin=FE(26.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCCCAGAGGCCGTTTC
R:
CTGTGAGGGGCAGGGTGC
Band lengths:
231-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]