RnoEX6002285 @ rn6
Exon Skipping
Gene
ENSRNOG00000021097 | Hpn
Description
hepsin [Source:RGD Symbol;Acc:61982]
Coordinates
chr1:89537986-89538743:-
Coord C1 exon
chr1:89538703-89538743
Coord A exon
chr1:89538269-89538434
Coord C2 exon
chr1:89537986-89538176
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCACCTCTCCACAGACT
3' ss Score
9.73
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CGACTGTCCTAGAGGCCGATTCCTGACTGCCACCTGCCAAG
Seq A exon
ACTGTGGCCGCAGGAAGCTGCCGGTGGATCGCATTGTGGGGGGCCAGGACAGCAGCCTGGGAAGATGGCCATGGCAGGTCAGCCTGCGTTATGATGGGACCCACCTCTGTGGGGGATCCCTGCTGTCCGGGGACTGGGTACTGACCGCTGCACACTGCTTTCCAGA
Seq C2 exon
GAGGAACCGGGTCCTGTCTCGGTGGCGAGTATTTGCTGGTGCTGTAGCCCGGACCTCACCTCATGCCGTGCAGCTGGGGGTTCAGGCTGTGATCTATCATGGGGGCTACCTTCCCTTTCGAGACCCTACTATCGACGAAAACAGCAATGACATTGCCCTGGTCCACCTCTCTAGCTCCCTGCCTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021097-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF092725=Hepsin-SRCR=FE(13.0=100)
A:
PF092725=Hepsin-SRCR=PD(6.5=12.5),PF0008921=Trypsin=PU(18.5=78.6)
C2:
PF0008921=Trypsin=FE(26.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCCTAGAGGCCGATTCC
R:
GAGAGGCAGGGAGCTAGAGAG
Band lengths:
226-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]