MmuEX6018492 @ mm9
Exon Skipping
Gene
ENSMUSG00000054537 | Tmprss11e
Description
transmembrane protease, serine 11e [Source:MGI Symbol;Acc:MGI:3513175]
Coordinates
chr5:87142744-87146298:-
Coord C1 exon
chr5:87146260-87146298
Coord A exon
chr5:87144523-87144703
Coord C2 exon
chr5:87142744-87143003
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTGTCTACTTGGCAGGTT
3' ss Score
6.66
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
AAATCAACAAGACAGAATCAGACAACTATTTCAACCATT
Seq A exon
GTTGTGGGACACGACGGAACAAATCTACAGTACAGACTAGTGTGAGGATTGTTGGAGGGACACCAGTAGAAGAGGAAGAGTGGCCATGGCAAAGCAGCCTGCGGTGGGATGGGTCCCACCGCTGTGGAGCAACTTTGATCAACAACACATGGCTTGTGACTGCTGCTCACTGCTTTCGAAC
Seq C2 exon
ACACAAGGACCCATCCAGATGGAGTGCTACCTTTGGGGCAACATTACAACCTCGAAAACTGACGACAGGCATCCGGAGGATAATTGTTCATGAAAAATACAAATACCCGTCCCATGACTATGACATTGCACTGGCAGAACTGTCTAAGCCGGTCCCCTGCACAAATGCAGTGCATAAGGTTTGTCTCCCAGATGCAAACCATGAGTTTCAGCCGGGGCAGAGGATGTTTGTGACAGGATTTGGAGCATTGAAAAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054537-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=72.1)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAAGACAGAATCAGACAACT
R:
CGGCTGAAACTCATGGTTTGC
Band lengths:
250-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: