DreEX6097822 @ danRer10
Exon Skipping
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10735314-10738002:+
Coord C1 exon
chr22:10735314-10735701
Coord A exon
chr22:10737479-10737647
Coord C2 exon
chr22:10737737-10738002
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTCACCTGTTTTCTTTGCAGACT
3' ss Score
11.06
5' ss Seq
AGGGTAGAA
5' ss Score
0.82
Exon sequences
Seq C1 exon
GGAGACTCTGGAGGCCCTCTGGCATGTGAGGTGGCCGCTGGGCGCTATTTCCTAGCAGGAATAGTGAGCTGGGGAGTGGGATGTGCACAGATCAATAAGCCTGGGGTCTATTCCCGTGTCACCAAGCTCCGCAACTGGATTGTGAGCTACACCAAAACTGCACCAGCATTCCAGGAGAACCCCACTGTCCCTAGTGTCACGACCACCGAGGCTCACCATGTGAAAGCTGCAAATCCTTCCTCTGAGCTCACCACTAGTGACTACATCCCTGCTCTTGGGAACTGCAGTGTCAATTATAACTGTGGCAGAGGCATGTGCATCAGCAAGATAAACCCAGAGTGTGACAGAGTCATCGACTGCCCCAATGAAGCCGATGAGAAAAACTGTG
Seq A exon
ACTGTGGGAATCGTCCAGCAGTGACCCAGGAGAGGATTATTGGTGGTGTCACTGCCCGGCGAGGTGAATGGCCATGGGTGGGCAGTCTGCAGTACCAACGCATTCATCGCTGTGGAGCGACACTTATCCACTGCAAATGGCTCCTAACCGCCGCTCACTGCTTCAGAGG
Seq C2 exon
TGACCTGAATCCTGCTGGTTACACGGTGAGTCTAGGCTCGGTCATTTGGTCTGGGTTGGGTGCTCTGGTGATCCCAGTGCAAAGGATCATCCCTCATCCTGCTTTCAATAGCAGCACCATGGACTTGGATGTGGCTCTGGTGGAAATTTCCATCCCTGCCCCCAAATCCTACACCATCCAGACTGTGTGTTTGCCTTCTCCCTGGCACAGCTTCATCAAATCTATGGAATGCTACATTATTGGATGGGGCGCTGTGAGGGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.9=35.4),PF0005713=Ldl_recept_a=WD(100=28.5)
A:
PF0008921=Trypsin=PU(19.5=77.2)
C2:
PF0008921=Trypsin=FE(39.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCACTGTCCCTAGTGTC
R:
CGAGCCTAGACTCACCGTGTA
Band lengths:
251-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]