HsaEX6091723 @ hg19
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:30079]
Coordinates
chr19:2413698-2416807:+
Coord C1 exon
chr19:2413698-2414016
Coord A exon
chr19:2415668-2415839
Coord C2 exon
chr19:2416536-2416807
Length
172 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTGTCCTCCTTCCAGAAT
3' ss Score
10.8
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGTGACTCAGGAGGACCCCTGGTCTGCGAGGAGCCCTCTGGCCGGTTCTTTCTGGCTGGCATCGTGAGCTGGGGAATCGGGTGTGCGGAAGCCCGGCGTCCAGGGGTCTATGCCCGAGTCACCAGGCTACGTGACTGGATCCTGGAGGCCACCACCAAAGCCAGCATGCCTCTGGCCCCCACCATGGCTCCTGCCCCTGCCGCCCCCAGCACAGCCTGGCCCACCAGTCCTGAGAGCCCTGTGGTCAGCACCCCCACCAAATCGATGCAGGCCCTCAGTACCGTGCCTCTTGACTGGGTCACCGTTCCTAAGCTACAAG
Seq A exon
AATGTGGGGCCAGGCCTGCAATGGAGAAGCCCACCCGGGTCGTGGGCGGGTTCGGAGCTGCCTCCGGGGAGGTGCCCTGGCAGGTCAGCCTGAAGGAAGGGTCCCGGCACTTCTGCGGAGCAACTGTGGTGGGGGACCGCTGGCTGCTGTCTGCCGCCCACTGCTTCAACCA
Seq C2 exon
CACGAAGGTGGAGCAGGTTCGGGCCCACCTGGGCACTGCGTCCCTCCTGGGCCTGGGCGGGAGCCCGGTGAAGATCGGGCTGCGGCGGGTAGTGCTGCACCCCCTCTACAACCCTGGCATCCTGGACTTCGACCTGGCTGTCCTGGAGCTGGCCAGCCCCCTGGCCTTCAACAAATACATCCAGCCTGTCTGCCTGCCCCTGGCCATCCAGAAGTTCCCTGTGGGCCGGAAGTGCATGATCTCCGGATGGGGAAATACGCAGGAAGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-'10-12,'10-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGGTCACCGTTCCTAA
R:
CACAGGGAACTTCTGGATGGC
Band lengths:
252-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)