MmuEX7004865 @ mm10
Exon Skipping
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80890178-80893257:+
Coord C1 exon
chr10:80890178-80890496
Coord A exon
chr10:80892157-80892328
Coord C2 exon
chr10:80892986-80893257
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTCCCCTGGCAGAGT
3' ss Score
11.11
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GGGGACTCCGGGGGACCCCTGGTCTGCGAGGAGCCTTCAGGAAGGTTCTTCCTGGCTGGTATCGTGAGCTGGGGAATCGGCTGCGCAGAAGCGCGGCGCCCAGGGGTCTACACCCGAGTCACCAGGCTGCGGGATTGGATCTTGGAGGTGACCAGCGCTGCTGACATGCCTGTGGTCCCCACCGCGACTCCAGCGCCCGCCACCCCCAGCACTCCCTGGCCTACCAGCCCTGAGAGCTGGGCGCCCAACACCTTTGCCAAACCCACCGCTGCCCCCAGCCCTGTGCCACTGCACCCCAGCACTACGGCCAAGCCACAAG
Seq A exon
AGTGTGGGGCCAGACCCGCCATGGACAAGCCCACTCGGATTGTGGGCGGGATCAGCGCCGTGTCTGGGGAGGTGCCCTGGCAGGCCAGCCTGAAGGAAGGACCCAGACATTTCTGCGGAGCCACCGTGGTGGGTGACCGCTGGCTGCTGTCTGCCGCCCACTGTTTCAACCA
Seq C2 exon
CACCAAAGTGGAGCAGGTGCAGGCGCACCTGGGCACCGTGTCCCTGCTGGGTGTCGGCGGGAGCCCCGTGAAACTGGGGCTCCGAAGGGTGGCCCTGCATCCCCGCTACAACCCAGGAATCCTGGACTTTGACGTGGCCCTGCTGGAGTTAGCCCAGCCATTGGTCTTCAACAAGTACATCCAACCGGTTTGTCTGCCCCTGGCCATCCACAAGTTCCCAGTCGGCCGGAAGTGTATGATCTCAGGCTGGGGCAACATGCAGGAGGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-'12-20,'12-17,16-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGACATGCCTGTGGTC
R:
CTTCGGAGCCCCAGTTTCAC
Band lengths:
249-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types