GgaEX0028305 @ galGal4
Exon Skipping
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:620814-626496:+
Coord C1 exon
chr28:620814-621132
Coord A exon
chr28:621787-621958
Coord C2 exon
chr28:626360-626496
Length
172 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTGGCTTTCGTTCAGAGT
3' ss Score
6.45
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGGGACTCCGGTGGGCCGCTGGTTTGTGAAGAACCATCTGGCAAGTTTTTCCTGGCAGGAATCGTGAGCTGGGGAATAGGATGTGCTGAAGCCAGGCGGCCAGGGGTTTACACACGCGTTACCAAACTGAGAGACTGGATCTTGGATGCTATTTCTCCCTTTCCCACCTCCATAACACGCACCGTCCCACTAACACACTCCAGTACTAACAGTAACGTGGTCACACCTGAAGAACTCAGCGCCACCACCAGCACAGCAATCCCCACCTCTTCACCAGCCCTGGCTGCCAGCAAACCAGCAACTGCACCCAGACCACAAG
Seq A exon
AGTGCGGAGGACGACCTGGCCTATCTAAACCCAACAAGATTGTGGGAGGAACCGATGCTTCCAGAGGGGAGATCCCCTGGCAGGTCAGCCTGCAGGAAGACTCGATGCATTTCTGTGGGGCAACGATCATTGGGGACCGCTGGCTGCTGTCAGCTGCGCACTGCTTCAACGA
Seq C2 exon
GCCTCATGACAAAGCACCTGCAAAAAGCAGCAGTGAATGTGATTGGAGACCAGGACTGCAAAAAGTTCTATCCTGTCCAGATCAGCAGCAGGATGGTGTGTGCTGGTTTCCCGCAGGGTACCGTCGACAGTTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458_MULTIEX1-5/11=3-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=43.0)
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCACCTCCATAACACGC
R:
CACCATCCTGCTGCTGATCTG
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]