GgaEX6034923 @ galGal3
Exon Skipping
Gene
ENSGALG00000011792 | F1NMD1_CHICK
Description
NA
Coordinates
chr4:53217589-53219907:-
Coord C1 exon
chr4:53219869-53219907
Coord A exon
chr4:53218092-53218272
Coord C2 exon
chr4:53217589-53217854
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTGACAGTCT
3' ss Score
9.2
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AATTGAATAAGGAGAACGGAGATAACCTTTTAAACAACT
Seq A exon
TCTGTGGAATACGAAAGGAGGCATTCTCCTTCACAGGAGTGGAAAGAATAACTGATGGACAGCGTGCACGGGATGGAGAATGGCCATGGCAGGCTAGTATTCAGCTCGATGGGACACATTACTGCGGTGCGTCGGTGATCAGTAATACGTGGCTAGTGACTGCAGCCCACTGCTTTAAAGG
Seq C2 exon
AGAAAGAGAACCTCGGAGATGGACTGCCAGCTTTGGAACTCTGTTGAGACCTCCAAAACAGAGAAAATATGTCCGAAGAATTATCATTCATGAAAAATACGATGGCTTTGTCCCTGATCATGAGTATGATATAGCTCTTGTGGAACTTGCCTCCTCTATTGAGTTCACAAGTGATGTGCACAGTGTCTGTCTTCCTGAAGCATCTTACATATTACGGGATAATACTTCCTGTTTTGTCTCAGGTTGGGGAGCTTTGAAGAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011792-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.3=72.1)
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATAAGGAGAACGGAGATAACCT
R:
AGATGCTTCAGGAAGACAGACAC
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]