BtaEX6039241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22466489-22468785:-
Coord C1 exon
chr7:22468649-22468785
Coord A exon
chr7:22467614-22467932
Coord C2 exon
chr7:22466489-22466660
Length
319 bp
Sequences
Splice sites
3' ss Seq
GGTGTGCCTCTGTCTCCCAGGGT
3' ss Score
8.12
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGGTCAAGCCGGAAATGCTGCAGAAGGCCACTGTGGAGCTGCTGGACCAGGCCCTGTGCACCAGCCTATACGGCCACTCACTCACCGACAGGATGGTGTGTGCTGGCTACCTGGACGGGAAGGTGGATTCCTGCCAG
Seq A exon
GGTGACTCGGGGGGCCCCCTGGTCTGCGAGGAGTCCTCCGGCAGGTTCTTCCTGGCTGGCATCGTGAGCTGGGGAATCGGCTGTGCGGAAGCCCAGCATCCAGGGGTCTACGCCCGAGTGACCAGTCTGCGGGACTGGATCCTGGAGACCATCGCTTCTGCAAGCAAGCCTCCAGCCCCCACAGTGGCTCTCGCCTCCACCACTCTCAGCACTGCCTGGCCCACCAGCCCCAAGAGCCTGGTGACTGACACCCTCACCAAACCCACACTGGCCCCTAGCACTATGCCTCTAGACTTGGCCACTGCTTCTAAGCCACAAG
Seq C2 exon
AGTGTGGGGCCAGGCCAGCGCTGGAGAAGCCCACTCGGATCGTGGGGGGGCTTGGGGCCTCCTTGGGGGAGGTGCCTTGGCAGGTCAGCCTGAAGGAGGGCTCGCGGCACTTCTGCGGAGCCACCGTGGTGGGGGACCGCTGGCTGCTGTCTGCCGCCCACTGCTTCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.084 C2=0.069
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=PD(20.1=43.0)
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAAGCCGGAAATGCTG
R:
GGTGGCTCCGCAGAAGTG
Band lengths:
262-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]