DreEX0080017 @ danRer10
Exon Skipping
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10735096-10737647:+
Coord C1 exon
chr22:10735096-10735238
Coord A exon
chr22:10735314-10735701
Coord C2 exon
chr22:10737479-10737647
Length
388 bp
Sequences
Splice sites
3' ss Seq
GGTTTTAAATGTGCCTTCAGGGA
3' ss Score
6.99
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
CTGAAGTGCCTTCCACATTACAGAAGGCAATCGTGAAGATCATTGACTCGAAAGTCTGCAACAAGTCATCTGTATACAGAGGAGCGCTTACACAAAATATGATGTGTGCTGGTTTTCTTCAAGGCAAGGTGGACTCTTGTCAG
Seq A exon
GGAGACTCTGGAGGCCCTCTGGCATGTGAGGTGGCCGCTGGGCGCTATTTCCTAGCAGGAATAGTGAGCTGGGGAGTGGGATGTGCACAGATCAATAAGCCTGGGGTCTATTCCCGTGTCACCAAGCTCCGCAACTGGATTGTGAGCTACACCAAAACTGCACCAGCATTCCAGGAGAACCCCACTGTCCCTAGTGTCACGACCACCGAGGCTCACCATGTGAAAGCTGCAAATCCTTCCTCTGAGCTCACCACTAGTGACTACATCCCTGCTCTTGGGAACTGCAGTGTCAATTATAACTGTGGCAGAGGCATGTGCATCAGCAAGATAAACCCAGAGTGTGACAGAGTCATCGACTGCCCCAATGAAGCCGATGAGAAAAACTGTG
Seq C2 exon
ACTGTGGGAATCGTCCAGCAGTGACCCAGGAGAGGATTATTGGTGGTGTCACTGCCCGGCGAGGTGAATGGCCATGGGTGGGCAGTCTGCAGTACCAACGCATTCATCGCTGTGGAGCGACACTTATCCACTGCAAATGGCTCCTAACCGCCGCTCACTGCTTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.123 C2=0.035
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=PD(19.9=35.4),PF0005713=Ldl_recept_a=WD(100=28.5)
C2:
PF0008921=Trypsin=PU(19.5=77.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACATTACAGAAGGCAATCGT
R:
GCAGTGAGCGGCGGTTAG
Band lengths:
294-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]