GgaEX0028304 @ galGal4
Exon Skipping
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:619380-626496:+
Coord C1 exon
chr28:619380-619551
Coord A exon
chr28:620814-621132
Coord C2 exon
chr28:626360-626496
Length
319 bp
Sequences
Splice sites
3' ss Seq
CACCTGGGCTTCTCTTGCAGGGG
3' ss Score
9.56
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGTGGGAGCCGCCCTGCCATGCAGACTGCCAGCAGGATAGTCGGAGGCACAGAGGCATCCAGAGGGGAGTTCCCCTGGCAGGTCAGCCTGCGAGAGAACAACGAGCATTTCTGTGGTGCTGCAATCCTCACGGAGAAGTGGCTGGTGTCTGCTGCTCACTGCTTTACCGA
Seq A exon
GGGGACTCCGGTGGGCCGCTGGTTTGTGAAGAACCATCTGGCAAGTTTTTCCTGGCAGGAATCGTGAGCTGGGGAATAGGATGTGCTGAAGCCAGGCGGCCAGGGGTTTACACACGCGTTACCAAACTGAGAGACTGGATCTTGGATGCTATTTCTCCCTTTCCCACCTCCATAACACGCACCGTCCCACTAACACACTCCAGTACTAACAGTAACGTGGTCACACCTGAAGAACTCAGCGCCACCACCAGCACAGCAATCCCCACCTCTTCACCAGCCCTGGCTGCCAGCAAACCAGCAACTGCACCCAGACCACAAG
Seq C2 exon
GCCTCATGACAAAGCACCTGCAAAAAGCAGCAGTGAATGTGATTGGAGACCAGGACTGCAAAAAGTTCTATCCTGTCCAGATCAGCAGCAGGATGGTGTGTGCTGGTTTCCCGCAGGGTACCGTCGACAGTTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458_MULTIEX1-3/11=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.414 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
PF0008921=Trypsin=PD(20.1=43.0)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTGCCAGCAGGATAGTCG
R:
TGAGCAACTGTCGACGGTACC
Band lengths:
286-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]