RnoINT0153593 @ rn6
Intron Retention
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79796952-79800074:-
Coord C1 exon
chr5:79799944-79800074
Coord A exon
chr5:79797085-79799943
Coord C2 exon
chr5:79796952-79797084
Length
2859 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
ATTCTTTTTCCTGCCCACAGGAA
3' ss Score
11.84
Exon sequences
Seq C1 exon
ACCTGGATTCCCCAAGAGAATTGACTGCTACTGAGGTTCAGTCAGAAACTGCCCTCCTCACCTGGAGACCTCCCCGGGCATCGGTCACTGGATACCTCCTGGTCTATGAGTCTGTGGATGGTACAGTCAAG
Seq A exon
GTATCTATCTGTAAATCACACACTGCTGTGCAAAACATCTGCATAAGCATCAAAGTGGGAAAGGAGTAGCTGATACTGTTTCTTCACTCCAATACAACTAGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAAAAAGAAAGAAAGAAACTGTAGAGACTGGATGTAGTACCAGATCTTGTGAGTCACAAACCGCATGTTTGCCTTTCTCCCATTAACTAGGCGCAAGCTATCTGAGAGACAGCCAAGATCAACAGCAGTGTTTTTATAAGACTTGACATTTTAGGAGTTGAGCTCATGGCCATCTAATGTTTCATTGAGAAAGTACCAACAGCTTCTTCTGCATTTTTGCCACGTACAGTGTCACCACCTGACCTACCGTGATGGAGCTCACCACATCCTTGCAATGTCACTTGATAAGACCAACTATAGCTATCATTACTATTACCTGTGTTCTCTCCTCCATGAGCTTTTCTGTGTGTCTAAGCTAGGTTACTTATTCTCTTCATAGTAAACTTTTTGCTGCATCTCCCTTGAAATCTGTGGATCTGCTTCACTTGAGCTAAGGAATACATGTCTCTACCCATATTACCTTTCTCCTAGATTTCATTAGTTTTGTTTCTGTGGTCTGGTCTCCCCTGTTCACGCTAGGAATTTCTTCCCAATGTCTTCTGATCCTAATTTATCCTTTCATACTTAAGTCAAGAACAATGAATCTAATGAGGAGTTCAGCTGTACATAAGGGTTTGTTGATGCTGGGCTTTGATGTAGAGATCAGCTGCTGTGTACCTGGCAATTTGTGGAGGCACCCCGTGGTGCTTAGGCTCTTACTGTGCAAGTGTTGCTTGCTCTCACACTTCCAGTGTGGTACCTTGATCTCCTCACCAGCTGTTCCTGGTGGACGTGAATCCAGAGGCTCTACTATAACTCAGATGCTCTAGAGAGTGAACCCCAGCCCTGCATCTGTTCTTGGAGGCGACAAGGAGAGTAGTGAATCAAGCTATTCCTCATGCGAAGCTTCCAAAGTAACTGAACCTCTCTTGAGCCACACACCACATTGCTTGCAAAGGCAGCTGAGCTGTTATACCCAATGCATCAGAAACTTGCTGGATGCTTCCCTGTATGTCAGCCAGCCTGGGGTGGTTCTGCCCACTCCAATAAGTTCCTAGCACTTCCTCCTCCCTCCCGTTCACTTTTCTAGCATATTCCTTATACTTGACTCCTATTTTATAAGATATGAAAACCACATAGAAGAATATTGGTATTTCTGGTCTGCCATGTTTACACAAGTTAGACACATTTCTAGCTTTTCTGGAGTTGAGACACAGTGAATGAATTCACAGTCTGAACTGAAGCTGGTCCTTAATCTTCAGGGTGTTAGTGCCCATACCTTTAAGACAGTGCATTGCACTTCTAGACCCCCAAAGTCTTCTGCAGGTTTGGGGGTCTAGAATTGTGCTTCTCTGGATCATGAGCCTCATTTCAGACTATTCACACTTAGACAACTGAACACAGAGGCAGAGAGCTGAATGCAAGACTATGCTCAGACAATTAGATAAGACTTGCTTTGTTCCCTGAGAGTTGATCCTTCCCCAGCAACCAGAGCTGATGGCTACACAAAGGTCACTAGATCACTGGCATTAAGTGAACACACATAAATCATGGATAAGGTGGTAGGAGACTTAGAGGATATGATACCATCCTCTGCCATCAACAAATTATGGATTGGGAACAAGTATCTCAGTTTCTGGGAAATTCAGTTCCCACACTGTACAAATATACGTAACATAACACAACTCCAGGAAGTCCCCAGGAAGGGAAAGAACCTTCTAGTGGTTTCCACACTGACTTATGGACTAAACAGAATCAACTTTGCCCAATGAATTGTAGAGATATGAATTGTGTTTGTGTTGCCATGATGGAGGAGGAATTCCAGTCTCAAACACCAAGGTCATTTACTAATAAGAATGGGAACCTAATGAGGATCTAAGACACAGTGAACCTTAGGAACTGAGCCCAAACACCAGTCTAGAACCCAGGAACCAGCCATATACATAGTTAGTGTGGGCCACACATCTGCCCCTCCTGGGTCATCAGCTCAAGCTTTTATCCTGCCCCACCTACTGGTTTATTAACATCATCTTTTGACTCAATAGTTCCTCAGCCTGAGTCCTAGTTTCTCTAGATATAAGCCTGCCTCCCCAGCATGTGATAATTCAGTTACTCTATGCTGAGGCCTAGGTTATCAAATTGTTTTAAATGTTGTGATAAAGGCTAAGCCCTCTTCCAGAACTGCTGACATAAATGGCCTCAATGTCTCTTGTGCAATCCACCTTACCATCAGCTTAAGCTTCTTAAGAATCAACAGCTTAAGCCAGTTCAAAGCCTCTCAGACCTCCCAACTCCTTATTGTTGATACATGCCAAACTGCATAACATCCCATTAAAGGTGTTTTGTGATCTCTCTTTGCCCACTTCCATTACCTACCCCCACTTAAAACTAGGGATAATTGATGCAAAGCAGTGATTCCGTGTTATTTTAACTTCCCCTGCCTTTCTGATCCCAGAACTTTTATTTACACAGTACTCTTGCTATCTCAGACATTCCAGATATACACTGGAATCTGGCATGCAGTAGGTACTGGGAGGGTTTTTGTTAAGTGAATATATGACTGCATGAGCCAGGGAAAGGGAGCATCTCTACTGTGAGACTATCTGGGACAAAACTGATTCTTTTTCCTGCCCACAG
Seq C2 exon
GAAGTCATTGTGGGGCCTGACACCACCTCCTACAGCCTGGCAGACCTGAGCCCATCCACCCACTACACAGCAAGAATCCAGGCATTGAGTGGGTCCCTGAGGAGCAAACTGATCCAAACCATCTTCACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645:ENSRNOT00000084563:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(52.6=93.2)
A:
NA
C2:
PF0004116=fn3=PD(44.9=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]