RnoINT0154082 @ rn6
Intron Retention
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77639371-77640858:+
Coord C1 exon
chr13:77639371-77639640
Coord A exon
chr13:77639641-77640763
Coord C2 exon
chr13:77640764-77640858
Length
1123 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAACTCCCTGATCTTTGTAGGAA
3' ss Score
7
Exon sequences
Seq C1 exon
GCTTCCGCCCTATCTCCCACTTGCACTTTTCTCATGTGACCTCCTCCAGTGTCAACATCACCTGGAGTGACCCATCTCCCCCAGCAGACAGACTCATTCTGAACTACAGCCCCAGGGATGAAGAGGAGGAGATGATGGAGGTTCTCTTGGATGCCACCAAGAGGCACGCCGTCCTAATGGGTCTACAGCCAGCCACTGAATATATAGTGAATCTCGTAGCTGTCCATGGGACAGTAACCTCTGAACCCATAGTGGGTTCTATCACTACAG
Seq A exon
GTGAGGCTGGAGAGGTTGAAGAGGGTTCTCACTTCAGCCTTTGAAAAGCCAATGCAATCTAAAAAAGGAAGCATTCAATAAACAGCAGACTGAGTCTGTGGCTAATAGACTTCTGTGAGTTACTTTGAAGCAGGTACTTCTTCCAGCCCTGCATAAGAGACATAGGATGAGAAACTCCCATTTGAAAAGTAGGAAAGGCCCAATGCTCTGCAGGCTCAAGTCTTGGATGTATTGGTCCTAGATTTACCAATCTAGGAAAATGCCCTGGAAAAAGCTTGTCTCTGAGGGAATCCTTCTAAGTAAAAAGGTGATGTTTCTATTCTAGAGAGCCATCTCTTGACTGCCTAATAAATGATTCTTCCTCAGAATTAACAGAGAGCTAGCATGTAACCATGTAGTAACCTGACATTCAGAGACAGGAGCTGATTTGCACTGTTTGGAAGACTTAGAACTCCTAGATGAGTTGGGTCATTTCCATTTGGTCATTTGCAAATGCAATGCCAAAATGACATATTTGTACATAAAAACACGTATGATTAGATAGTTCCCTCCATACTGACAAGAACTCACAAATTGGAAAAGTATGTTAGTCTGCTAGTGCAACCCCACAGTTTAAGTGCACCATAAATATGCACCATAAATAAAATATAACTTAGGAAAGTATATTTGTTTAGGATTTGTGCTCTAAACTCTCTCTACAGTTAATAGGCAATTTTTCCAAACTGAGCCAAAAGTAGATGATAAAAACTAAGAGAGAGTAGCAGAGTTGACTTTTTCCAGGAGAAGTTTCCCTTCGAGAAGATAATTATGTGATTCTCTATTTGAAATAAAACACATGAACTTAACAGGAAATTTCTAGTTGGTCTACATAAGTAGTAGTTGCTGCACAGAAACACAGATCTTGCCAGTTTAGCTTCCTGTTGTTAGGACATTCATGACTGGCTTTAGCTATAGCTACAATGTTACAAGTGTGACATCACACTGTCATTTAGGGATGCCCAGTTAGTTGTGTAGGGTTATGCCTGCCTGAGGGATATTAGTGGATCAACACAAATCTAGGAATAGATATTCCATTTTCAAACTGTGCTTCTGTCTTTTCCCCACAACTCCCTGATCTTTGTAG
Seq C2 exon
GAATTGATCCTCCCAAAAACATCACAATTAGCAACGTGACTAAGGACTCCCTGACAGTTTCCTGGAGCCCTCCTGTTGCGCCTTTTGATTACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468:ENSRNOT00000003407:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.0)
A:
NA
C2:
PF0004116=fn3=PU(36.7=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGCCCTATCTCCCACTT
R:
ATCAAAAGGCGCAACAGGAGG
Band lengths:
358-1481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]