RnoINT0154625 @ rn6
Intron Retention
Gene
ENSRNOG00000006894 | Tor1a
Description
torsin family 1, member A [Source:RGD Symbol;Acc:628863]
Coordinates
chr3:9803263-9803654:-
Coord C1 exon
chr3:9803479-9803654
Coord A exon
chr3:9803391-9803478
Coord C2 exon
chr3:9803263-9803390
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACTGCCGCTATTTCGGCAGCAA
3' ss Score
4.17
Exon sequences
Seq C1 exon
GACCAATTACAGATGTGGATTCGAGGCAACGTGAGCGCCTGTGCTCGGTCCATCTTCATCTTTGACGAGATGGACAAGATGCACGCCGGCCTCATCGACGCCATCAAGCCTTTCCTAGACTATTACGACGTGGTAGATGAGGTCTCCTATCAGAAGGCCATCTTCATCTTCCTCAG
Seq A exon
GTGAGGCTGTGGCCGGGACATGGTGGGAGACCCTGGAGCCGGGGGCTTTGGGAAGAGCGGTCCCTCCTCACTGCCGCTATTTCGGCAG
Seq C2 exon
CAATGCAGGGGCAGAAAGGATCACAGACGTGGCTCTGGATTTCTGGAGAAGTGGGAAGCAGAGAGAGGAGATCAAGCTCAGAGACATGGAGCACGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006894:ENSRNOT00000064660:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGATGGACAAGATGCACG
R:
CTCCTCTCTCTGCTTCCCACT
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]